Table 2 Measures of nucleotide diversity, Tajima's D, and LD.

Locus	Bp	Population	S^	Pi	Theta	D	Mean r² short distances	Mean r² longer distances
41	928	California	26(0)	0.0108	0.0061	2.88**	0.31	0.198
		New York	33(10)	0.0111	0.0087	1.09	0.215	0.187
		Europe, alfalfa	33(17)	0.0091	0.0083	0.37	0.275	0.141
		Europe, clover	38(16)	0.0116	0.0093	0.92	0.193	0.217
870	1487	California	30(13)	0.0061	0.0055	0.45	0.458	0.300
		New York	28(11)	0.0053	0.0049	0.31	0.353	0.044
		Europe, alfalfa	31(2)	0.0093	0.0056	2.54**	0.408	0.167
		Europe, clover	27(4)	0.0072	0.0046	2.19*	0.716	0.159
CAA	1608	California	6(5)	0.0008	0.0010	-0.65	NA	NA
		New York	14(3)	0.0028	0.0020	1.34	0.221	0.182
		Europe, alfalfa	7(3)	0.0024	0.0013	2.45**	0.416	0.447
		Europe, clover	17(2)	0.0040	0.0029	1.28	0.285	0.078
380	1429	California	15(5)	0.0021	0.0019	0.29	0.723	0.039
		New York	14(5)	0.0021	0.0016	1.15	0.565	0.555
		Europe, alfalfa	13(3)	0.0022	0.0016	1.27	0.269	0.076
		Europe, clover	16(3)	0.0031	0.0020	2.00*	0.323	0.22

^Numbers of singleton SNPs indicated in parentheses
* Significant (P < 0.05) and ** highly significant (P < 0.01) Tajima's D values [43]

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