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Table 1 Comparison of some LD software platforms

From: LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs

  LDA JLIN Haploview LD2SNPing
Input file formats txt csv ped, info, txt xls, csv, txt, doc
Output file formats print pdf, eps, png, txt png, txt jpg, txt
D, D', r2, P
δ Q , ρ  
Hardy-Weinberg equilibrium
Genotype/haplotype frequency  
Tag SNP mining by gene input    
SNP information retrieval by rsID input    
Enzyme mining for RFLP genotyping    
Online retrieval of multiple SNPs for LD plot    
2D distance  
2D graph visualization
2D graph/text data output  
3D distance/graph visualization