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Table 1 Simulated levels of fixation for the four simulated scenarios ranging from a fixed QTL (Case 1) to equal frequencies in both founder lines (Case 4)

From: Modelling dominance in a flexible intercross analysis

   Case 1 Case 2 Case 3 Case 4
Line A Proportion A alleles 1 1 3/4 1/2
Line A Proportion B alleles 0 0 1/4 1/2
Line B Proportion A alleles 0 1/6 1/4 1/2
Line B Proportion B alleles 1 5/6 3/4 1/2