From: Association between SNPs within candidate genes and compounds related to boar taint and reproduction
SNP ID | Alleles | MAF | Homozygote 1 | Heterorozygote | Homozygote 2 |
---|---|---|---|---|---|
AK1_483(ex5) | (C) T | 0.176 | C/C (n = 41) | C/T (n = 290) | T/T (n = 725) |
AKR1C3_in4b | C (T) | 0.436 | C/C (n = 331) | C/T (n = 518) | T/T (n = 198) |
AKR1C3_in4c | C (T) | 0.449 | C/C (n = 302) | C/T (n = 501) | T/T (n = 199) |
ATP5F1_183(ex3) | (A) G | 0.104 | A/A (n = 9) | A/G (n = 204) | G/G (n = 855) |
Bap1_3'UTRa | (A) T | 0.055 | A/A (n = 2) | A/T (n = 112) | T/T (n = 947) |
CTNND1_3'UTRa | (G) T | 0.11 | G/G (n = 13) | G/T (n = 199) | T/T (n = 811) |
CTNND1_3'UTRb | (A) G | 0.104 | A/A (n = 14) | A/G (n = 186) | G/G (n = 825) |
CYB5_-8(prom) | G (T) | 0.028 | G/G (n = 995) | G/T (n = 60) | - |
CYP11B1_in1a | (C) G | 0.015 | C/C (n = 2) | C/G (n = 29) | G/G (n = 1036) |
CYP21_in9 | (A) G | 0.075 | A/A (n = 11) | A/G (n = 135) | G/G (n = 905) |
CYP21_in6b | (C) T | 0.075 | C/C (n = 11) | C/T (n = 137) | T/T (n = 919) |
CYP21_in8b | A (G) | 0.075 | A/A (n = 893) | A/G (n = 134) | G/G (n = 11) |
CYP21_in8c | C (T) | 0.276 | C/C (n = 554) | C/T (n = 438) | T/T (n = 75) |
CYP21_in8d | (A) C | 0.322 | A/A (n = 122) | A/C (n = 415) | C/C (n = 485) |
CYP2C49_1083(ex7) | C (G) | 0.499 | C/C (n = 2) | C/G (n = 1041) | G/G (n = 1) |
CYP2D6_1276(ex7) | C (T) | 0.228 | C/C (n = 642) | C/T (n = 382) | T/T (n = 55) |
CYP2D6_1287(ex7) | (A) G | 0.148 | A/A (n = 21) | A/G (n = 260) | G/G (n = 739) |
CYP2E1_1423(ex9) | (A) G | 0.48 | A/A (n = 244) | A/G (n = 489) | G/G (n = 285) |
CYP2E1_in1a | (C) G | 0.296 | C/C (n = 98) | C/G (n = 1420) | G/G (n = 521) |
CYP2E1_in1b | C (DEL) | 0.482 | C/C (n = 287) | C/D (n = 545) | D/D (n = 248) |
CYP2E1_in6 | C (T) | 0.482 | C/C (n = 284) | C/T (n = 536) | T/T (n = 246) |
CYP3A4_1498(ex13) | (A) G | 0.497 | A/A (n = 232) | A/G (n = 566) | G/G (n = 238) |
EGFR_3'UTRb | (C) T | 0.164 | C/C (n = 28) | C/T (n = 304) | T/T (n = 763) |
EGFR_3'UTRc | A (C) | 0.163 | A/A (n = 761 | A/C (n = 301) | C/C (n = 27) |
EGFR_in2a | (C) T | 0.097 | C/C (n = 8) | C/T (n = 185) | T/T (n = 840) |
EGFR_in2b | C (T) | 0.099 | C/C (n = 843) | C/T (n = 188) | T/T (n = 9) |
FDX1_3'UTR | (C) T | 0.056 | C/C (n = 1) | C/T (n = 109) | T/T (n = 884) |
HBS1L_1994(ex17) | (A) G | 0.235 | A/A (n = 51) | A/G (n = 399) | G/G (n = 616) |
HPGD_3'UTR | G (T) | 0.154 | G/G (n = 756) | G/T (n = 284) | T/T (n = 21) |
HSD11B1_793(ex6) | C (T) | 0.061 | C/C (n = 942) | C/T (n = 114) | T/T (n = 8) |
HSD17B1_3'UTRa | A (C) | 0.157 | A/A (n = 751) | A/C (n = 300) | C/C (n = 18) |
HSD17B4_in18d | (A) T | 0.273 | A/A (n = 83) | A/T (n = 412) | T/T (n = 565) |
HSD17B7_622(ex6) | (A) G | 0.374 | A/A (n = 137) | A/G (n = 498) | G/G (n = 398) |
HYAL1_83(ex1) | C (T) | 0.336 | C/C (n = 464) | C/T (n = 470) | T/T (n = 118) |
IQGAP2_3'UTR | A (G) | 0.231 | A/A (n = 606) | A/G (n = 389) | G/G (n = 46) |
MIS_in1 | (C) T | 0.05 | C/C (n = 3) | C/T (n = 96) | T/T (n = 929) |
MMP1_279(ex2) | (A) G | 0.237 | A/A (n = 58) | A/G (n = 374) | G/G (n = 603) |
NGFIB_in3 | C (T) | 0.298 | C/C (n = 543) | C/T (n = 428) | T/T (n = 108) |
NGFIB_1195(ex4) | (A) G | 0.243 | A/A (n = 53) | A/G (n = 401) | G/G (n = 590) |
NGFIB_in4 | (A) G | 0.245 | A/A (n = 59) | A/G (n = 397) | G/G (n = 596) |
NGFIB_1374(ex5) | (C) T | 0.249 | C/C (n = 60) | C/T (n = 421) | T/T (n = 605) |
PAPSS2_3'UTRb | (A) G | 0.231 | A/A (n = 57) | A/G (n = 387) | G/G (n = 639) |
PPP1R1A_291(ex5) | (A) G | 0.022 | - | A/G (n = 48) | G/G (n = 1043) |
PRKAB2_3'UTRa | (A) T | 0.203 | A/A (n = 41) | A/T (n = 342) | T/T (n = 663) |
RNF14_3'UTR | C (G) | 0.468 | C/C (n = 300) | C/G (n = 495) | G/G (n = 234) |
SARG_3'UTR | (A) G | 0.256 | A/A (n = 70) | A/G (n = 395) | G/G (n = 580) |
SOX9_in2c | (C) G | 0.266 | C/C (n = 76) | C/G (n = 386) | G/G (n = 550) |
SRD5A2_3'UTRd | (C) T | 0.223 | C/C (n = 54) | C/T (n = 353) | T/T (n = 627) |
STARD3_3'UTR | C (T) | 0.036 | C/C (n = 983) | C/T (n = 74) | T/T (n = 1) |
TSPYL4_3'UTR | C (G) | 0.373 | C/C (n = 397) | C/G (n = 508) | G/G (n = 134) |
UGT1A1_325(ex1) | (C) T | 0.081 | C/C (n = 7) | C/T (n = 156) | T/T (n = 886) |
UGT1A1_in3a | (A) G | 0.218 | A/A (n = 54) | A/G (n = 370) | G/G (n = 670) |
UGT1A1_in3b | (C) T | 0.141 | C/C (n = 22) | C/T (n = 252) | T/T (n = 778) |
UGT1A10_3'UTR | A (G) | 0.079 | A/A (n = 894) | A/G (n = 155) | G/G (n = 6) |
URB_2730(ex7) | A (G) | 0.16 | A/A (n = 722) | A/G (n = 296) | G/G (n = 18) |