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Table 3 SNPs used for the final association analyses in Norwegian Landrace.

From: Association between SNPs within candidate genes and compounds related to boar taint and reproduction

SNP ID Alleles MAF Homozygote 1 Heterorozygote Homozygote 2
AK1_483(ex5) (C) T 0.263 C/C (n = 109) C/T (n = 677) T/T (n = 914)
AKR1C3_in4b C (T) 0.37 C/C (n = 1349) C/T (n = 285) T/T (n = 20)
AKR1C3_in4c C (T) 0.095 C/C (n = 1324) C/T (n = 268) T/T (n = 19)
ALB_1103(ex9) (C) T 0.093 C/C (n = 10) C/T (n = 293) T/T (n = 1374)
Bap1_3'UTRa (A) T 0.415 A/A (n = 266) A/T (n = 851) T/T (n = 548)
Bap1_3'UTRb (A) G 0.336 A/A (n = 171) A/G (n = 751) G/G (n = 705)
CRSP9_504(ex1) (A) G 0.106 A/A (n = 17) A/G (n = 320) G/G (n = 1333)
CTNND1_3'UTRb A (G) 0.449 A/A (n = 512) A/G (n = 816) G/G (n = 342)
CYB5_-8(prom) G (T) 0.027 G/G (n = 1611) G/T (n = 92) -
CYP11B1_in1c C (T) 0.492 C/C (n = 435) C/T (n = 783) T/T (n = 409)
CYP11B1_in1a (C) G 0.49 C/C (n = 398) C/G (n = 842) G/G (n = 432)
CYP21_in6a C (G) 0.241 C/C (n = 946) C/G (n = 643) G/G (n = 81)
CYP21_in9 A (G) 0.231 A/A (n = 986) A/G (n = 608) G/G (n = 83)
CYP21_in8b (A) G 0.183 A/A (n = 50) A/G (n = 518) G/G (n = 1124)
CYP2C49_1251(ex8) (A) C 0.488 - A/C (n = 1560) C/C (n = 39)
CYP2D6_1276(ex7) C (T) 0.222 C/C (n = 1003) C/T (n = 604) T/T (n = 71)
CYP2D6_1287(ex7) (A) G 0.197 A/A (n = 21) A/G (n = 594) G/G (n = 1002)
CYP2E1_1422(ex9) (C) T 0.417 C/C (n = 286) C/T (n = 829) T/T (n = 565)
CYP2E1_1423(ex9) (A) G 0.183 A/A (n = 55) A/G (n = 493) G/G (n = 1103)
CYP2E1_in1a C (G) 0.416 C/C (n = 562) C/G (n = 798) G/G (n = 285)
CYP2E1_in1b C (DEL) 0.189 C/C (n = 1086) C/D (n = 519) D/D (n = 55)
CYP2E1_in6 C (T) 0.186 C/C (n = 1064) C/T (n = 497) T/T (n = 52)
CYP3A4_3'UTR (C) T 0.335 C/C (n = 168) C/T (n = 804) T/T (n = 728)
CYP3A4_1498(ex13) (A) G 0.331 A/A (n = 163) A/G (n = 786) G/G (n = 729)
DHRS6_3'UTR (C) T 0.333 C/C (n = 192) C/T (n = 720) T/T (n = 748)
EGFR_3'UTRa C (T) 0.447 C/C (n = 482) C/T (n = 795) T/T (n = 313)
EGFR_3'UTRb C (T) 0.439 C/C (n = 493) C/T (n = 817) T/T (n = 296)
EGFR_3'UTRc A (C) 0.131 A/A (n = 1262) A/G (n = 390) G/G (n = 24)
EGFR_in12 C (T) 0.449 C/C (n = 503) C/T (n = 858) T/T (n = 332)
EGFR_in2a (C) T 0.132 C/C (n = 26) C/T (n = 384) T/T (n = 1236)
EGFR_in2b (C) T 0.417 C/C (n = 298) C/T (n = 809) T/T (n = 578)
HBLD2_3'UTRa G (T) 0.488 G/G (n = 409) G/T (n = 783) T/T (n = 371)
HSD11B1_793(ex6) (C) T 0.306 C/C (n = 155) C/T (n = 710) T/T (n = 804)
HSD17B1_3'UTRb (G) T 0.101 G/G (n = 20) G/T (n = 293) T/T (n = 1335)
HSD17B1_3'UTRa (A) C 0.13 A/A (n = 19) A/C (n = 397) C/C (n = 1256)
HSD17B7_622(ex6) A (G) 0.276 A/A (n = 854) A/G (n = 593) G/G (n = 141)
HSPCA_3'UTR C (T) 0.429 C/C (n = 527) C/T (n = 811) T/T (n = 294)
HSPCA_2175(ex9) A (G) 0.433 A/A (n = 538) A/G (n = 833) G/G (n = 311)
HYAL1_748(ex1) (G) T 0.488 G/G (n = 429) G/T (n = 872) T/T (n = 390)
HYAL1_75(ex1) (C) T 0.489 C/C (n = 390) C/T (n = 863) T/T (n = 427)
HYAL2_583(ex1) (A) C 0.486 A/A (n = 380) A/C (n = 819) C/C (n = 424)
HYAL2_in1b A (G) 0.488 A/A (n = 428) A/G (n = 874) G/G (n = 389)
IQGAP2_3'UTR A (G) 0.27 A/A (n = 837) A/G (n = 640) G/G (n = 109)
MIS_in1 C (T) 0.13 C/C (n = 1288) C/T (n = 383) T/T (n = 30)
MMP1_in3a C (T) 0.253 C/C (n = 927) C/T (n = 633) T/T (n = 104)
MMP13_in2 (A) C 0.269 A/A (n = 113) A/C (n = 667) C/C (n = 881)
NGFIB_in3 C (T) 0.052 C/C (n = 1509) C/T (n = 167) T/T (n = 3)
PAPSS2_3'UTRa A (G) 0.269 A/A (n = 861) A/G (n = 620) G/G (n = 121)
PIAS1_1863(ex14) A (G) 0.266 A/A (n = 885) A/G (n = 679) G/G (n = 104)
PPP1R1A_291(ex5) (A) G 0.103 A/A (n = 16) A/G (n = 314) G/G (n = 1343)
RALBP1_3'UTR C (T) 0.025 C/C (n = 1585) C/T (n = 81) T/T (n = 2)
RNF14_3'UTR (C) G 0.433 C/C (n = 297) C/G (n = 843) G/G (n = 520)
SARG_3'UTR A (G) 0.192 A/A (n = 1113) A/G (n = 508) G/G (n = 71)
SOX9_in2c C (G) 0.406 C/C (n = 588) C/G (n = 750) G/G (n = 284)
SRD5A2_3'UTRd C (T) 0.478 C/C (n = 449) C/T (n = 826) T/T (n = 377)
SRD5A2_3'UTRa G (T) 0.176 G/G (n = 1122) G/T (n = 506) T/T (n = 41)
STARD3_3'UTR C (T) 0.133 C/C (n = 1279) C/T (n = 384) T/T (n = 33)
TSPYL4_3'UTR C (G) 0.408 C/C (n = 588) C/G (n = 830) G/G (n = 275)
UGT1A1_325(ex1) (C) T 0.105 C/C (n = 19) C/T (n = 301) T/T (n = 1296)
UGT1A10_3'UTR (A) G 0.115 A/A (n = 66) A/G (n = 241) G/G (n = 1310)
URB_2730(ex7) A (G) 0.166 A/A (n = 1139) A/G (n = 464) G/G (n = 40)
  1. SNP ID indicates gene name and basepair from A TG start codon, exon number is shown between brackets and if the SNP is in an intron, the intron number is indicated. MAF is the estimated minor allele frequency, and the minor allele is indicated between brackets. Number of animals (n) is shown between brackets after each genotype. DEL = deletion.