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Table 6 Significant results for SNP associations in Duroc and Norwegian Landrace.

From: Association between SNPs within candidate genes and compounds related to boar taint and reproduction

Trait SNP LRT D LRT NL % of tot.var. D % of tot.var. NL Favourable allele
ln(Androstenone fat) NGFIB_in4 5.99   5.1   A
  CTNND1_3'UTRa 6.02   16.3   T
  CYP2D6_1276(ex7) 6.35   5.6   C
  CYP2C49_1083(ex7) 7.33   12.3   C
ln(Androstenone plasma) BAP1_3'UTRb   5.40   1.3 A
  HYAL2_583(ex1)   5.53   1.6 A
  BAP1_3'UTRa   6.45   2.0 A
  SRD5A2_3'UTRd   8.80   2.1 T
ln(Indole) CYP21_in9 8.52   6.3   A
  CYP21_in6b 9.36   7.3   C
  CYP21_in8b 10.4   6.4   G
  CYP2E1_1422(ex9)   28.3   4.5 C
  CYP2E1_1423(ex9) 25.4 39.5 6.5 4.9 A
  CYP2E1_in1a 11.9 19.6 7.5 3.1 G
  CYP2E1_in1b 24.8 35.4 7.0 4.8 DEL
  CYP2E1_in6 26.4 31.8 7.4 4.5 A
ln(Skatole) CYP21_in9 7.86   12.4   A
  CYP21_in6b 7.20   13.4   C
  CYP2E1_1423(ex9) 6.81 12.0 2.5 3.0 A
  CYP2E1_in1b 8.38 8.80 3.4 2.1 DEL
  CYP2E1_in6 7.79 9.10 3.1 2.2 A
ln(Estrone sulphate) AKR1C3_in4b 5.92   1.5   T
  AKR1C3_in4c 6.57   1.9   T
  AK1_483(ex5) 13.8   16.2   T
  SRD5A2_3'UTRd   6.30   1.3 C
ln(17β-estradiol) AKR1C3_in4c 5.60   2.0   T
  PPP1R1A_291(ex5)   5.71   1.3 G
ln(Testosterone) HYAL2_583(ex1)   6.28   1.5 C
  BAP1_3'UTRa   6.80   1.8 T
  1. Significance level is presented (LRT) together with percentage of the total phenotypic variance explained by the SNP and the favourable allele. DEL = deletion.