Table 4 PCR sequence verification for 16 single-feature polymorphisms (SFPs)
From: Single-feature polymorphism discovery by computing probe affinity shape powers
SFPs1 | Tissue2 | Genotype3 | Shape4 | Weight5 | PCR6 | Map info7 |
|---|---|---|---|---|---|---|
Contig16609_at10 | 3 | U | 4 | 85.45 | + | NA |
Contig4329_at3 | 4 | B | 4 | 70.77 | + | 6H,L, 67.7 cM |
Contig4329_at6 | 2 | B | 4 | 71.33 | + | 6H,L, 67.7 cM |
Contig5339_s_at8 | 4 | B | 4 | 65.08 | + | 6H,L, 70 cM |
Contig7178_s_at8 | 4 | U | 3.67 | 50.82 | + | 6H,L, 70 cM |
Contig4107_x_at11 | 4 | U | 2 | 23.01 | + | NA |
Contig9366_at10 | 3 | U | 2.67 | 39.79 | + | NA |
Contig159_at1 | 4 | U | 2 | 15.03 | + | NA |
Contig159_at6 | 3 | U | 1 | 3.78 | + | NA |
Contig9298_at7 | 2 | U | 1 | 3.64 | + | NA |
Contig14687_at7 | 3 | B | 3 | 37.18 | + | 6H,L, 71.1 cM |
HVSMEg0016A12r2_s_at5 | 4 | B | 4 | 75.24 | + | 6H,S, 49.4 cM |
HVSMEg0016A12r2_s_at7 | 3 | B | 2 | 16.13 | + | 6H,S, 49.4 cM |
HVSMEn0016F09r2_s_at7 | 1 | U | 1 | 4.48 | + | 6H,L, 71.1 cM |
Contig2856_x_at6 | 3 | U | 1.67 | 8.16 | + | 6H,L, 60.2 cM |
Contig8825_at7 | 3 | B | 1 | 5.48 | - | 3H,L, 55.6 cM |