Identification of a two-marker-haplotype on Bos taurus autosome 18 associated with somatic cell score in German Holstein cattle

Table 4 Estimated effects on SCS for maternally inherited two-marker-gametes in interval 9 and interval 12-13

Interval	Haplotype	Number of Animals	Haplotype Frequencies	Mean of Estimates	Standard Error Mean
9	A - 113	258	0.2986	-0.0006	0.0014
9	A - 117	198	0.2292	0.0217	0.003
9	G - 113	339	0.3924	-0.0059	0.0022
9	G - 117	69	0.0799	0.0276	0.003
12 - 13	249 - G	38	0.0409	0.0378	0.0018
12 - 13	249 - A	262	0.2820	0.0176	0.0009
12 - 13	251 - G	78	0.0840	-0.0012	0.0007
12 - 13	251 - A	32	0.0344	0.0002	0.0024
12 - 13	253 - G	3	0.0032	-0.0150	0.0021
12 - 13	253 - A	44	0.0474	-0.0253	0.0012
12 - 13	255 - G	53	0.0571	0.0122	0.0009
12 - 13	255 - A	375	0.4037	-0.0043	0.0009
12 - 13	257 - G	4	0.0043	-0.0019	0.0022
12 - 13	257 - A	40	0.0431	0.0144	0.0022

Summary of means for gametic effects estimated for maternally inherited two-marker-interval gametes considering IBD coefficients. Haplotype frequencies were determined by direct counting.

ISSN: 2730-6844