From: Assessment of global phase uncertainty in case-control studies
hipROA data | genotype | nr of individuals | 111 | 112 | 121 | 122 | 211 | 212 | 221 | loss per genotype | total loss |
---|---|---|---|---|---|---|---|---|---|---|---|
Cases n = 61 | 1HH | 10 | 0.25 | 0.25 | 0.25 | 0.25 | 0 | 0 | 0 | 1.00 | |
HHH | 7 | 0 | 0.03 | 0.18 | 0.19 | 0.19 | 0.18 | 0.03 | 0.79 | ||
H1H | 2 | 0.19 | 0.19 | 0 | 0 | 0.19 | 0.19 | 0 | 0.77 | ||
HH1 | 3 | 0.04 | 0 | 0.040 | 0 | 0.04 | 0 | 0.040 | 0.16 | ||
no ambiguity | 39 | ||||||||||
loss per haplotype | 3.00 | 3.07 | 3.85 | 3.83 | 1.85 | 1.62 | 0.31 | 17.52 | |||
Controls n = 653 | H1H | 28 | 0.21 | 0.21 | 0 | 0 | 0.21 | 0.21 | 0 | 0.83 | |
HH1 | 46 | 0.18 | 0 | 0.18 | 0 | 0.18 | 0 | 0.18 | 0.72 | ||
1HH | 91 | 0.12 | 0.12 | 0.12 | 0.12 | 0 | 0 | 0 | 0.49 | ||
HHH | 47 | 0 | 0.04 | 0.06 | 0.10 | 0.10 | 0.06 | 0.04 | 0.40 | ||
no ambiguity | 441 | ||||||||||
loss per haplotype | 25.29 | 19.09 | 22.23 | 15.760 | 18.59 | 8.52 | 10.34 | 119.81 | |||
Simulated data | genotype | nr of individuals | 111 | 112 | 121 | 122 | 211 | 212 | 221 | loss per genotype | total loss |
Cases n = 500 | 1HH | 83 | 0.25 | 0.25 | 0.25 | 0.25 | 0 | 0 | 0 | 1.00 | |
HHH | 40 | 0 | 0.03 | 0.11 | 0.13 | 0.13 | 0.11 | 0.03 | 0.55 | ||
H1H | 26 | 0.11 | 0.11 | 0 | 0 | 0.11 | 0.11 | 0 | 0.15 | ||
HH1 | 32 | 0.04 | 0 | 0.04 | 0 | 0.04 | 0 | 0.04 | 0.15 | ||
no ambiguity | 319 | ||||||||||
loss per haplotype | 24.80 | 24.94 | 26.26 | 26.07 | 9.36 | 7.17 | 2.52 | 121.12 | |||
Controls n = 500 | H1H | 25 | 0.23 | 0.23 | 0 | 0 | 0.23 | 0.23 | 0 | 0.93 | |
HH1 | 36 | 0.21 | 0 | 0.21 | 0 | 0.21 | 0 | 0.21 | 0.83 | ||
HHH | 43 | 0 | 0.05 | 0.06 | 0.11 | 0.11 | 0.06 | 0.05 | 0.44 | ||
1HH | 70 | 0 | 0.11 | 0.11 | 0.11 | 0.11 | 0 | 0 | 0.42 | ||
no ambiguity | 326 | ||||||||||
loss per haplotype | 20.68 | 15.23 | 17.65 | 11.89 | 17.86 | 8.61 | 9.55 | 101.47 |