Skip to main content

Table 1 RBC HAM QTL peaks

From: An experimental assessment of in silico haplotype association mapping in laboratory mice

Chr

SNP ID

Mb

Range

HAM

Bootstrap

P

1

rs13475796

32,907,323

-

3.89

73.4%

P < 0.63

2

rs6257970

124,821,501

116,276,771-131,106,484

5.10

94.8%

P < 0.05

4

rs3664701

105,717,060

105,385,114-105,717,060

4.60

88.5%

P < 0.20

7

rs13479152

24,436,399

24,248,444-24,436,399

4.10

75.9%

P < 0.63

11

rs13481145

88,251,886

-

3.87

79.2%

P < 0.63

11

rs3024036

116,489,336

116,489,336-116,486,660

3.68

65.5%

P < 0.63

12

rs13481527

73,806,035

72,236,752-74,576,810

4.92

96.2%

P < 0.20

15

rs3023430

100,626,402

-

3.74

68.5%

P < 0.63

  1. HAM QTL information for significant (P < 0.05), highly suggestive (P < 0.20), and suggestive (P < 0.63) RBC peaks at HAM scores of 4.97, 4.34, and 3.64 respectively. HAM score is -log P value. Positions are based on NCBI Mouse Build 36 position (bp) of 1st SNP in 3-SNP window. The range is the locations of first and last SNP surrounding the peak that had a value <0.63. Boldface highlights peaks with P < 0.20 significance level.