Table 3 Significant HDL HAM QTL peaks (P < 0.05)
From: An experimental assessment of in silico haplotype association mapping in laboratory mice
Chr | SNP ID | Mb | Range | HAM | bootstrap | True/false | Ref |
|---|---|---|---|---|---|---|---|
2 | rs6220817 | 3,011,010 | - | 6.30 | 76.2% | False | a |
2 | rs13476342 | 8,836,883 | - | 6.43 | 75.8% | False | a |
2 | rs13476342 | 99,935,969 | 98,155,571-100,911,329 | 6.58 | 77.4% | True | 20,21 |
2 | rs13476760 | 126,832,982 | 126,336,525-126,832,982 | 5.74 | 65.6% | True | 20,21 |
2 | rs13476760 | 135,828,607 | - | 5.84 | 63.0% | True | 20,21 |
3 | rs13477475 | 147,010,573 | - | 6.03 | 62.4% | False | a |
3 | rs13477475 | 151,010,779 | - | 6.62 | 77.8% | False | a |
4 | rs3693400 | 146,890,343 | - | 5.89 | 69.2% | True | 20,21 |
5 | rs3693400 | 55,019,679 | 54,974,352-55,019,679 | 5.67 | 58.2% | True | 20,21 |
5 | rs6265085 | 65,029,889 | 65,029,889-65,818,061 | 6.64 | 80.5% | True | 20,21 |
5 | rs6265085 | 74,887,607 | - | 5.57 | 61.3% | True | 20,21 |
5 | rs13478349 | 80,970,712 | 80,945,292-80,970,712 | 7.21 | 87.4% | True | 20,21 |
5 | rs13478349 | 84,064,324 | - | 5.85 | 60.8% | True | 20,21 |
5 | rs13460234 | 91,625,499 | - | 5.87 | 66.6% | True | 20,21 |
5 | rs13460234 | 97,622,792 | - | 5.49 | 57.1% | True | 20,21 |
5 | rs3668978 | 130,797,661 | - | 5.94 | 60.6% | True | 20,21 |
5 | rs3668978 | 140,694,495 | 139,748,376-140,870,443 | 5.98 | 67.5% | True | 20,21 |
6 | rs13478802 | 66,337,104 | 65,537,646-66,337,104 | 6.11 | 70.0% | True | 20,21 |
8 | rs13478802 | 36,795,544 | - | 5.77 | 61.6% | True | a |
8 | rs13479806 | 68,181,411 | - | 5.67 | 62.4% | True | a |
8 | rs13479806 | 100,597,759 | - | 5.78 | 68.0% | True | b |
8 | rs13479951 | 103,466,389 | - | 5.50 | 62.7% | True | b |
9 | rs13479951 | 40,786,256 | 40,599,802-41,263,933 | 5.67 | 70.7% | True | 20,21 |
9 | rs4227694 | 58,060,520 | - | 5.67 | 62.8% | True | 20,21 |
10 | rs4227694 | 28,727,018 | - | 5.54 | 58.2% | False | a |
10 | rs13480621 | 59,831,809 | - | 6.23 | 76.1% | False | a |
10 | rs13480621 | 66,633,531 | 66,622,596-69,957,648 | 6.26 | 74.1% | False | a |
11 | rs13480851 | 7,106,276 | 7,106,276-7,133,854 | 6.23 | 67.3% | True | 20,21 |
11 | rs13480851 | 18,664,287 | 18,012,274-18,776,572 | 6.90 | 76.8% | True | 20,21 |
11 | rs13480915 | 24,340,180 | - | 5.97 | 64.7% | True | 20,21 |
11 | rs13480915 | 84,210,490 | 84,186,523-84,210,490 | 6.39 | 71.2% | True | 20,21 |
11 | rs13481191 | 100,981,257 | - | 6.05 | 66.5% | True | 20,21 |
12 | rs13481191 | 17,813,143 | - | 6.51 | 77.8% | True | 20,21 |
12 | rs3655333 | 29,314,512 | 29,245,634-29,342,877 | 6.26 | 70.0% | True | 20,21 |
12 | gnf12.033.545 | 35,706,448 | - | 5.78 | 65.2% | True | 20,21 |
12 | mCV23299449 | 40,033,960 | - | 6.60 | 73.7% | True | 20,21 |
12 | rs6197363 | 46,205,386 | 46,195,413-46,672,638 | 6.55 | 67.3% | True | 20,21 |
13 | rs6197363 | 82,973,404 | - | 6.64 | 83.5% | True | 20,21 |
13 | rs13481961 | 98,370,936 | 97,388,131-98,516,414 | 5.52 | 60.6% | True | 20,21 |
13 | rs13482032 | 118,459,784 | 116,568,685-118,459,784 | 7.66 | 93.9% | False | a |
14 | rs6291247 | 11,729,249 | 11,724,710-11,804,687 | 5.53 | 56.7% | True | 20,21 |
14 | rs3678171 | 16,445,566 | 16,421,809-16,469,365 | 5.53 | 56.7% | True | 20,21 |
16 | rs4163564 | 13.779,788 | - | 5.83 | 62.7% | True | b |
18 | rs13483379 | 57,799,450 | - | 6.96 | 76.3% | True | 20,21 |
18 | rs3663770 | 67,730,210 | 67,730,210-67,748,515 | 6.59 | 72.4% | True | 20,21 |
18 | rs13483493 | 89,985,557 | - | 6.87 | 79.6% | True | b |