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Table 1 Exact test for Hardy-Weinberg equilibrium for microsatellite loci typed in 96 unrelated fish from the NCCCWA rainbow trout selective breeding program.

From: Estimates of linkage disequilibrium and effective population size in rainbow trout

Locus

GenBank

Acc. or reference

OMY

Posit. Kos cM1

Number Alleles

PIC2

Hetero- zygosity

Allelic Diversity

χ 2

DF

Pr > χ2

Exact P3

OMM3006

G73806

13

39.9

13

0.844

0.802

0.858

127.6

78

0.0003

0.0615

OMM5092

CA348764

13

39.9

5

0.705

0.708

0.746

20.7

10

0.0231

0.0152

OMY27DU

[4]

13

44.6

5

0.575

0.594

0.618

5.7

10

0.8402

0.7166

OMM1670

BV212162

13

44.6

16

0.889

0.844

0.898

242.4

120

<.0001

0.0072

CA341677

CA341677

13

44.6

6

0.544

0.604

0.590

99.5

15

<.0001

0.2147

OMM1687

BV212173

13

45.7

3

0.390

0.417

0.501

7.2

3

0.0659

0.0325

Oneu8

U56708

14

22.2

6

0.596

0.583

0.654

5.8

15

0.9824

0.8181

OMM1312

G73552

14

49.2

16

0.882

0.885

0.891

125.5

120

0.3477

0.1418

OMYRGT2TUF

AB087587

14

50.7

9

0.724

0.750

0.748

34.9

36

0.5218

0.6786

OMM1596

BV212112

14

53.9

13

0.857

0.844

0.871

98.9

78

0.0552

0.0068

OMM5271

BV211986

14

58.3

11

0.806

0.802

0.827

53.6

55

0.5286

0.4101

OmyRGT41TUF

[4]

14

58.3

16

0.876

0.854

0.885

114.9

120

0.6136

0.3824

Ogo1UW

AF007827

14

58.3

5

0.620

0.635

0.679

98.9

10

<.0001

0.1218

OMM3089

BV718454

14

62.5

4

0.612

0.760

0.679

6.1

6

0.4098

0.3408

OMM1447

BV079591

14

63.4

22

0.936

0.823

0.940

237.6

231

0.3696

0.0017

OMM3115

AB162343

14

63.4

12

0.843

0.490

0.859

219.2

66

<.0001

<.0001

BHMS429

AF256719

14

64.3

12

0.890

0.885

0.898

50.5

66

0.9214

0.9010

OMYFGT5TUF

[4]

14

64.3

10

0.569

0.604

0.620

40.8

45

0.6515

0.3260

BHMS185

AF256675

14

72.9

3

0.454

0.583

0.546

2.8

3

0.4239

0.2933

OMM1415

BV722101

14

75.0

11

0.793

0.719

0.811

76.0

55

0.0317

0.0233

OMM1356

BV005148

14

79.1

4

0.385

0.281

0.432

138.6

6

<.0001

<.0001

CR374305

CR374305

14

81.2

13

0.790

0.646

0.809

439.9

78

<.0001

<.0001

OMM1467

BV079662

14

82.7

12

0.866

0.906

0.878

79.2

66

0.1271

0.1546

OMM1643

BV212150

14

86.5

11

0.764

0.750

0.785

89.7

55

0.0022

0.0354

OMM5143

BV211872

14

106.2

11

0.828

0.427

0.846

271.4

55

<.0001

<.0001

OMM3044

BV722031

14

130.0

8

0.739

0.396

0.775

242.4

28

<.0001

<.0001

OMM1712

BV212193

17

81.7

13

0.855

0.823

0.868

67.9

78

0.7859

0.5445

CA367675

CA367675

17

84.8

12

0.851

0.917

0.864

51.7

66

0.9017

0.8540

OMM5043

CA349167

17

89.5

8

0.795

0.750

0.820

34.5

28

0.1836

0.1205

OMM3126

BV683039

17

90.3

18

0.904

0.833

0.911

144.1

153

0.6841

0.1027

OMM1437

BV722116

17

91.3

15

0.897

0.865

0.904

105.6

105

0.4648

0.1512

OMM1357

BV005149

17

105.4

17

0.867

0.833

0.877

207.1

136

<.0001

0.0305

OMM5227

BX301679

17

107.8

7

0.697

0.510

0.738

91.2

21

<.0001

<.0001

CA041953

CA041953

17

136.3

3

0.420

0.458

0.476

2.0

3

0.5711

0.4895

OMM1026

AF346683

sex

0.0

15

0.880

0.896

0.890

123.9

105

0.1007

0.5136

OMM1461

BV079604

sex

17.7

5

0.637

0.625

0.683

5.1

10

0.8870

0.7533

OMYRGT28TUF

AB087599

sex

21.1

15

0.830

0.760

0.846

172.6

105

<.0001

0.1674

OMM1000

AF346664

sex

21.1

3

0.385

0.417

0.425

0.5

3

0.9170

0.9396

OMM5031

CA349143

sex

29.7

9

0.722

0.865

0.753

59.8

36

0.0076

0.0005

OMM5032

CA349143

sex

29.7

11

0.842

0.844

0.857

94.7

55

0.0007

0.0895

BX076085

BX076085

sex

35.6

12

0.868

0.646

0.879

156.8

66

<.0001

<.0001

OMM1372

BV005159

sex

36.0

6

0.560

0.323

0.604

98.1

15

<.0001

<.0001

OMM1212

BV722077

sex

44.3

11

0.794

0.781

0.813

61.9

55

0.2421

0.2160

OMM1443

BV079588

sex

44.3

13

0.873

0.896

0.884

94.5

78

0.0984

0.0511

OMM3109

BV718471

sex

46.2

13

0.754

0.677

0.771

101.8

78

0.0363

0.0754

OMM1456

BV079600

sex

46.9

7

0.691

0.729

0.736

14.6

21

0.8447

0.7070

OMM1118

AF375026

sex

47.7

24

0.921

0.948

0.925

314.2

276

0.0564

0.1749

OMM1405

BV722096

sex

51.3

11

0.817

0.594

0.835

141.1

55

<.0001

<.0001

OMM1665

BV212292

sex

58.5

17

0.881

0.656

0.890

325.0

136

<.0001

<.0001

  1. 1Microsatellite loci position in the NCCCWA rainbow trout genetic map [9].
  2. 2Polymorphic information content (PIC).
  3. 3Exact P-value estimated using 10,000 permutations with SAS Proc Allele [70].