From: Linkage disequilibrium reveals different demographic history in egg laying chickens
 | Dataset I | Dataset II | ||
---|---|---|---|---|
 | BE | WE | BC | WC |
Total Number of SNPs | 57'635 | 57'635 | 36'455 | 36'455 |
# SNPs monomorph | 15'675 | 33'915 | 11'800 | 22'815 |
# SNPs ungenotyped | 836 | 894 | 982 | 1'059 |
# SNPs with MAF < 5% | 2'893 | 1'883 | 2'392 | 450 |
Genome coverage1 (Mb) | 1031 | 1027 | 956 | 949 |
# SNPs in use | 37'075 | 19'802 | 19'892 | 8'447 |
# common SNPs2 | 14653 | 6072 | ||
Mean adjacent marker spacing (kb) | 27.8 | 51.8 | 48.0 | 112.3 |
Mean MAF | 0.28 ± 0.13 | 0.34 ± 0.14 | 0.28 ± 0.21 | 0.24 ± 0.15 |
Mean observed heterozygosity | 0.35 ± 0.15 | 0.34 ± 0.15 | 0.47 ± 0.21 | 0.37 ± 0.13 |
Mean expected heterozygosity | 0.37 ± 0.12 | 0.36 ± 0.12 | 0.373 ± 0.12 | 0.36 ± 0.12 |