Genomic regions associated with kyphosis in swine

BMC Genomic Data

Table 3 Candidate gene SNP marker associations and estimated effects in the USMARC resource population of swine

SSC¹	Position²	Gene³	Marker⁴	Additive effect	Dominance effect	P	Correction⁵
2	120873345	KCNN2	65626_380	0.0585197	0.08578508	0.01751	NS
6	32562176	RYR1	67575_125	-0.1615369	-0.1089273	0.006965	NS
6	32721576	RYR1	68805_283	-0.0478559	-0.1008613	0.017855	NS
6	64274674	PLOD1	69958_99	-0.072519	-0.0770903	0.023685	NS
6	64290502	PLOD1	65451_67	-0.1302993	-0.0040416	0.010667	NS
6	64290571	PLOD1	65451_236	-0.150833	-0.2602181	0.000319	0.02
6	64291351	PLOD1	65458_515	0.1137805	-0.0142219	0.020264	NS
6	64291424	PLOD1	65458_588	0.0831903	-0.1026598	0.002483	NS
6	64291439	PLOD1	65458_603	-0.1545773	0.03408042	0.014415	NS
14	80811196	MYST4	12267_169	0.1447504	-0.0619209	0.040538	NS

¹ SSC is the swine chromosome.
² Position based on the pig genome sequence assembly Nov. 2009 (SGSC Sscrofa9.2/susScr2).
³Candidate gene or gene located nearest the amplicon.
⁴ Name of the marker in the USMARC database.
⁵ The correction for multiple tests was performed by multiplying P from the association analysis with the number of markers (n = 70).

ISSN: 2730-6844