From: Identification of Type 2 Diabetes-associated combination of SNPs using Support Vector Machine
Gene | dbSNP ID(b129) | Chromosome | Location | Region* | Alleles* | χ2p-value | |
---|---|---|---|---|---|---|---|
 |  |  |  |  |  | Genotype | Allele |
SELE | rs4786 | 1 | 167958756 | 3'UTR | G>A | 0.0462 | 0.1299 |
IL10 | rs1554286 | 1 | 205010856 | intron | T>C | 0.0470 | 0.0170 |
CAP1 | rs16837478 | 1 | 40207033 | 3'UTR | C>A | 0.0489 | 0.5850 |
VAMP3 | rs707457 | 1 | 7753651 | nearGene-5 | G>T | 0.0755 | 0.0299 |
VAMP3 | novel | 1 | 7775035 | 3'UTR | A>G | 0.0567 | 0.0220 |
SLC11A1 | novel | 2 | 219084963 | exon | G>A | 0.0113 | 0.0229 |
RHOQ | rs17038378 | 2 | 46661749 | nearGene-3 | W>D | 0.0426 | 0.1773 |
FGA | rs2070022 | 4 | 155724398 | 3'UTR | C>T | 0.0099 | 0.0083 |
FGA | rs6050 | 4 | 155727040 | exon | A>G | 0.0261 | 0.0077 |
FGA | rs2070011 | 4 | 155731347 | nearGene-3 | A>G | 0.0208 | 0.0053 |
IL4 | rs2243250 | 5 | 132037053 | nearGene-5 | T>C | 0.0090 | 0.0025 |
SOD2 | rs5746136 | 6 | 160023074 | intron | G>A | 0.0948 | 0.0348 |
CD36 | rs3211908 | 7 | 80131852 | intron | C>T | 0.0402 | 0.1445 |
LPL | rs343 | 8 | 19855067 | intron | C>A | 0.0215 | 0.0075 |
RAPGER1 | rs875968 | 9 | 133461085 | intron | G>A | 0.0423 | 0.1247 |
IL18 | rs1946518 | 11 | 111540668 | nearGene-5 | T>G | 0.0097 | 0.1591 |
CAT | rs17886119 | 11 | 34417280 | intron | C>T | 0.0138 | 0.2849 |
CAT | rs1408034 | 11 | 34432364 | intron | C>T | 0.0123 | 0.2745 |
TCF1 | rs1169288 | 12 | 119901033 | exon | T>G | 0.0391 | 0.6975 |
TCF1 | rs2464196 | 12 | 119919810 | exon | T>C | 0.0181 | 0.9747 |
SNAP23 | rs9302112 | 15 | 40607743 | intron | T>C | 0.0414 | 0.0842 |
ACE | rs4362 | 17 | 58927493 | exon | C>T | 0.0384 | 0.0270 |
NOS2A | rs2297518 | 17 | 23120724 | exon | G>A | 0.0109 | 0.5354 |
STXBP4 | rs9902718 | 17 | 50416621 | intron | T>C | 0.0478 | 0.0156 |
STXBP4 | rs10468513 | 17 | 50417902 | intron | C>A | 0.0478 | 0.0156 |
STXBP4 | rs11658717 | 17 | 50431985 | intron | A>G | 0.0396 | 0.0128 |
ASPSCR1 | novel | 17 | 77562902 | intron | G>T | 0.0456 | 0.0511 |