Vietnamese chickens: a gate towards Asian genetic diversity

Berthouly-Salazar, C; Rognon, X; Nhu Van, T; Gély, M; Vu Chi, C; Tixier-Boichard, M; Bed'Hom, B; Bruneau, N; Verrier, E; Maillard, JC; Michaux, JR

doi:10.1186/1471-2156-11-53

BMC Genomic Data

Table 2 List of breeds, diversity measures and geographical distribution of haplogroups: the number of samples N i, the haplotype diversity h, the nucleotide diversity π.

From: Vietnamese chickens: a gate towards Asian genetic diversity

Breed names	Code	Province	Country	Ni	Number of haplotypes	h	π	Haplogroups (%)							Nb of haplogroups
								A	B	C	D	E	F	G
Beijing Youkei	BY	Beijing	China	4	3	0.83	0.006	75	25	0	0	0	0	0	2
Huxu	HX	Guangdong	China	5	1	0.00	0.000	0	0	100	0	0	0	0	1
Qinyuan blotted	QY	Guangdong	China	10	3	0.60	0.011	0	33	67	0	0	0	0	2
Luke	LK	Guanxi	China	9	4	0.81	0.013	44	22	33	0	0	0	0	3
Wanfeng Wugu	Wangf	Guanxi	China	9	5	0.81	0.016	44	11	11	0	0	11	22	5
Dwarf Wugu	Dwarf	Guizhou	China	10	5	0.86	0.012	27	27	0	0	45	0	0	3
Guizhou Moutain Wugu	Wguiz	Guizhou	China	10	5	0.76	0.012	64	0	18	0	27	0	0	3
Heikang Layer	HK	Guizhou	China	5	2	0.60	0.013	60	0	40	0	0	0	0	2
Wumeng Wugu	WM	Guizhou	China	4	2	0.67	0.003	0	100	0	0	0	0	0	1
Gushi Wugu	Wgus	Henan	China	11	6	0.89	0.012	42	8	0	0	42	0	8	4
Henan Cockfight	DJ	Henan	China	4	1	0.00	0.000	25	58	0	0	17	0	0	3
Taihe Silky	SY	Henan	China	14	3	0.65	0.010	36	50	14	0	0	0	0	3
Black Silky hubei	HBHF	Hubei	China	10	3	0.60	0.005	40	60	0	0	0	0	0	2
Silky hybrid	KD	Hubei	China	3	2	0.67	0.009	33	67	0	0	0	0	0	2
Silky hubei	HBBF	Hubei	China	11	3	0.69	0.011	36	45	18	0	0	0	0	3
Yunxian Wugu	Y	Hubei	China	10	5	0.87	0.014	20	30	50	0	0	0	0	3
Xuefeng	XF	Hunan	China	8	4	0.64	0.008	0	75	13	0	13	0	0	3
Langshan	RS	Jiangsu	China	4	1	0.00	0.000	0	100	0	0	0	0	0	1
Silky Jiangsu	JSW	Jiangsu	China	13	6	0.85	0.013	38	23	31	0	0	8	0	4
Yugan wugu	YG	Jiangxi	China	4	4	1.00	0.015	25	25	0	0	50	0	0	3
Bigbone	DG	Liaoning	China	4	2	0.50	0.005	25	75	0	0	0	0	0	2
Souguang	SG	Shangdong	China	4	3	0.83	0.007	25	75	0	0	0	0	0	2
Caoke	Caoke	Sichuan	China	16	6	0.62	0.004	94	0	0	0	6	0	0	2
Chengdu Black Silky	ChenBlaSil	Sichuan	China	9	5	0.81	0.010	44	44	0	0	0	0	11	3
Chengdu Silky	ChenSil	Sichuan	China	6	4	0.71	0.004	100	0	0	0	0	0	0	1
SichuanMountain Wugu	sdw	Sichuan	China	11	6	0.87	0.012	25	8	25	0	42	0	0	4
Ya'an Non Wugu	YH	Sichuan	China	7	3	0.67	0.002	100	0	0	0	0	0	0	1
Ya'an Wugu	YW	Sichuan	China	10	8	0.87	0.010	44	22	11	0	22	0	0	4
Tibetan	ZJ	Tibetan	China	4	1	0.00	0.000	100	0	0	0	0	0	0	1
Chahua	Chahua	Yunnan	China	16	8	0.87	0.008	42	56	0	0	2	0	0	3
Chigulu	Chig	Yunnan	China	19	7	0.78	0.015	27	33	0	9	0	9	21	5
Douji	Douji	Yunnan	China	9	5	0.72	0.010	11	72	0	0	6	6	6	5
Jiangbian	Jiang	Yunnan	China	28	11	0.85	0.013	14	0	0	0	4	43	39	4
Lv'erwu	Lerv	Yunnan	China	29	13	0.92	0.017	24	14	3	0	10	17	31	6
Nixi	NX	Yunnan	China	9	8	0.97	0.015	9	7	0	0	2	32	50	5
Shenggou	Sheng	Yunnan	China	3	2	0.67	0.019	50	0	0	0	0	50	0	2
Tenchongxue	Teng	Yunnan	China	45	15	0.88	0.016	32	7	0	0	5	50	7	5
Whenshanshandi	When	Yunnan	China	35	12	0.89	0.015	31	28	3	0	0	14	25	5
Wuding	WD	Yunnan	China	7	4	0.81	0.010	29	57	0	0	0	0	14	3
Yanjing Wugu	YJ	Yunnan	China	8	7	0.96	0.015	13	13	13	0	0	0	63	4
HG population	HG	Ha Giang	Vietnam	106	25	0.86	0.013	21	53	5	2	0	13	6	6
G. g. jabouillei				3	3			33	0	0	33	0	33	0	3
G. g. spadiceus	(Genbank + Gg1)			47	13			15	38	0	23	0	11	0	5*
G. g. gallus	(Genbank + Gg2 + Gg3)			46	19			4	26	0	22	2	11	15	8*

* G. g. gallus also had haplotypes from cluster I and H that are not represented in this table

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