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Table 3 Significant haplotypes of markers at the ITGA11 gene region associated with tick burden

From: Haplotypes that include the integrin alpha 11 gene are associated with tick burden in cattle

SNP1 Code Sample2 N03 N1 N2 R2 4 α5 SE6 p-value
10snp
h10
110111111 - 0 DTE
(48)
605 17 0 0.0146 -0.738 0.243 0.0025
10snp
h19
111000111 - 0 DTE
(48)
582 38 2 0.0131 -0.432 0.151 0.0043
10snp
h23
111010101 - 0 BRM
(24)
419 4 0 0.0422 2.119 0.492 2 × 10-5^
4,5,6
h7
- - - 010 - - - - - DTE
(8)
808 23 1 0.0082 -0.507 0.194 0.0092
   BRM
(5)
477 8 0 0.0386 1.542 0.350 1 × 10-5^
6,7,8
h1
- - - - - 001 - - - DTE
(7)
891 124 10 0.0125 -0.297 0.083 0.0003^
7,8,9
h2
- - - - - - 011 - - DTE
(7)
734 156 0 0.0077 -0.231 0.088 0.0087
7,8,9
h7
- - - - - - 101 - - BRM
(5)
476 42 2 0.0128 0.380 0.147 0.0099^
8,9,10
h2
- - - - - - - 011 - BRM
(3)
477 42 2 0.0128 0.381 0.147 0.0097^
8,9,10
h5
- - - - - - - 111 - BRM
(3)
6 98 417 0.0183 -0.310 0.100 0.0020^
8,9,11
h2
- - - - - - - 10 - 1 BRM
(5)
513 5 0 0.0261 1.651 0.444 0.0002^
8,9,11
h3
- - - - - - - 11 - 0 DTE
(6)
538 332 8 0.0117 -0.212 0.066 0.0013^
   BRM
(5)
8 102 408 0.0150 -0.269 0.096 0.0053^
9,10,11
h2
- - - - - - - - 011 BRM
(5)
537 5 0 0.0233 1.596 0.444 0.0004^
  1. 1 SNP markers used to generate the haplotypes (4- rs29025981, 5- rs41594962, 6- ss161109814, 7- ss161109807, 8- ss161109797, 9- rs29023635, 10- rs29023639, 11- rs29014770) and haplotype number.
  2. 2 DTE - dairy tick experiment, BRM - Brahman and number of haplotypes reconstructed.
  3. 3 N0 number of animals with zero copies of the haplotype, N1 number of animals with one copy of the haplotype, N2 number of animals with two copies of the haplotype.
  4. 4 Proportion of residual variance explained by the common haplotype.
  5. 5 Haplotype substitution effect in phenotypic standard deviations (tick count for the DTE and tick score for BRM).
  6. 6 Standard error of α.
  7. ^ Significant after Bonferroni correction.