From: Improved IBD detection using incomplete haplotype information
Phased genotype | NO | LL | LR | RL | RR |
---|---|---|---|---|---|
(AA, AA) | p 4 | p 3 | p 3 | p 3 | p 3 |
(AA, AB) | p 3 q | p 2 q | 0 | p 2 q | 0 |
(AA, BA) | p 3 q | 0 | p 2 q | 0 | p 2 q |
(AA, BB) | p 2 q 2 | 0 | 0 | 0 | 0 |
(AB, AA) | p 3 q | p 2 q | p 2 q | 0 | 0 |
(AB, AB) | p 2 q 2 | pq 2 | 0 | 0 | p 2 q |
(AB, BA) | p 2 q 2 | 0 | pq 2 | p 2 q | 0 |
(AB, BB) | pq 3 | 0 | 0 | pq 2 | pq 2 |
(BA, AA) | p 3 q | 0 | 0 | p 2 q | p 2 q |
(BA, AB) | p 2 q 2 | 0 | p 2 q | pq 2 | 0 |
(BA, BA) | p 2 q 2 | p 2 q | 0 | 0 | pq 2 |
(BA, BB) | pq 3 | pq 2 | pq 2 | 0 | 0 |
(BB, AA) | p 2 q 2 | 0 | 0 | 0 | 0 |
(BB, AB) | pq 3 | 0 | pq 2 | 0 | pq 2 |
(BB, BA) | pq 3 | pq 2 | 0 | pq 2 | 0 |
(BB, BB) | q 4 | q 3 | q 3 | q 3 | q 3 |