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Table 10 Average Allelic Imputation Error Rate and Timing Results for HapMap datasets

From: A haplotype inference algorithm for trios based on deterministic sampling

 

Allelic Imputation Error Rate

Time(s)

PHASE

0.0051

5360

BEAGLE

  

   R = 1

0.0129

3.156

   R = 4

0.0112

3.339

TDS

0.0134

2.53

2SNP

0.0831

0.685