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Table 3 SNP associations with milk traits, somatic cell score and calf perinatal mortality

From: DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle

SNP Gene/BTA Allele substitution Milk protein yield (kg) Milk fat percentage1 (×100) Milk protein percentage1 (×100) Somatic cell count1 (units×100) Calf perinatal mortality1 (%×100)
rs42940189 CALCR/BTA4 A→G 0.073 (0.424) -1.31 (1.15) -0.47 (0.56) -0.64 (0.92) 0.0.() 3.67 (14.79)
rs42940187 CALCR/BTA4 C→T 0.131 (0.365) 1.17 (0.99) -0.07 (0.48) 0.78 (0.79) -9.05 (12.35)
GRB10_p.A5394141C GRB10/BTA4 A→C 0.103 (0.605) -1.12 (1.64) -1.03 (0.80) 0.43 (1.31) -3.88 (21.17)
rs43375833 GRB10/BTA4 C→T -0.522 (0.280) 0.43 (0.76) -0.08 (0.37) 0.04 (0.61) 7.99 (9.47)
rs42575466 ZNF215/BTA15 A→G 0.175 (0.575) -0.73 (1.55) -1.42 (0.75) 0.28 (1.25) -4.84 (19.26)
rs42575474 ZNF215/BTA15 A→G 0.009 (0.284) -1.23 (0.77) -0.77* (0.37) 1.13 (0.61) 11.69 (9.28)
PEG3_p.A64370595G PEG3/BTA18 A→G 0.127 (0.276) 0.14 (0.75) -0.20 (0.37) -0.77 (0.61) 0.09 (9.28)
PEG3_p.C64367437T PEG3/BTA18 C→T -0.025 (0.269) -0.03 (0.73) 0.07 (0.35) 0.78 (0.58) 0.86 (9.35)
rs17871322 PEG3/BTA18 A→G 0.031 (0.278) 0.02 (0.75) 0.10 (0.37) -0.72 (0.60) -20.15* (9.61)
rs41899915 ZIM2/BTA18 C→G 0.031 (0.325) 0.71 (0.88) -0.04 (0.43) -1.01 (0.71) 20.64 (11.32)
rs41899913 ZIM2/BTA18 C→G 0.303 (0.342) -0.59 (0.92) 0.03 (0.45) 0.37 (0.75) -25.22* (12.80)
rs41899911 ZIM2/BTA18 C→T 0.026 (0.326) 0.76 (0.88) -0.03 (0.43) -0.97 (0.71) 21.82* (10.97)
rs41899910 ZIM2/BTA18 C→T -0.267 (0.293) -0.03 (0.79) -0.13 (0.39) 0.05 (0.64) -2.33 (9.92)
RASGRF1_p.C25039690T RASGRF1/BTA21 A→G -0.104 (0.255) -0.85 (0.69) -0.70* (0.34) 1.29* (0.55) 1.55 (8.55)
rs42194502 PHLDA2/BTA29 A→T 0.087 (0.413) 0.64 (1.12) -0.39 (0.54) -0.40 (0.89) 24.19 (15.76)
rs42637579 TSPAN32/BTA29 A→G 0.078 (0.268) -0.86 (0.72) -0.33 (0.35) 0.35 (0.58) -12.12 (9.24)
rs42637578 TSPAN32/BTA29 C→T -0.776 (0.652) -2.32 (1.39) -1.20 (0.67) -0.83 (1.11) -29.91 (15.55)
  1. Standard errors for each trait are shown in parentheses. Levels of significance: P ≤ 0.10; *P ≤ 0.05; **P ≤ 0.01. 1A value of 1 prior to multiplication by 100 equates to 1 percentage unit.