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Table 3 SNP associations with milk traits, somatic cell score and calf perinatal mortality

From: DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle

SNP Gene/BTA Allele substitution Milk protein yield (kg) Milk fat percentage1 (×100) Milk protein percentage1 (×100) Somatic cell count1 (units×100) Calf perinatal mortality1 (%×100)
rs42940189 CALCR/BTA4 A→G 0.073
(0.424)
-1.31
(1.15)
-0.47
(0.56)
-0.64
(0.92)
0.0.()
3.67
(14.79)
rs42940187 CALCR/BTA4 C→T 0.131
(0.365)
1.17
(0.99)
-0.07
(0.48)
0.78
(0.79)
-9.05
(12.35)
GRB10_p.A5394141C GRB10/BTA4 A→C 0.103
(0.605)
-1.12
(1.64)
-1.03
(0.80)
0.43
(1.31)
-3.88
(21.17)
rs43375833 GRB10/BTA4 C→T -0.522
(0.280)
0.43
(0.76)
-0.08
(0.37)
0.04
(0.61)
7.99
(9.47)
rs42575466 ZNF215/BTA15 A→G 0.175
(0.575)
-0.73
(1.55)
-1.42
(0.75)
0.28
(1.25)
-4.84
(19.26)
rs42575474 ZNF215/BTA15 A→G 0.009
(0.284)
-1.23
(0.77)
-0.77*
(0.37)
1.13
(0.61)
11.69
(9.28)
PEG3_p.A64370595G PEG3/BTA18 A→G 0.127
(0.276)
0.14
(0.75)
-0.20
(0.37)
-0.77
(0.61)
0.09
(9.28)
PEG3_p.C64367437T PEG3/BTA18 C→T -0.025
(0.269)
-0.03
(0.73)
0.07
(0.35)
0.78
(0.58)
0.86
(9.35)
rs17871322 PEG3/BTA18 A→G 0.031
(0.278)
0.02
(0.75)
0.10
(0.37)
-0.72
(0.60)
-20.15*
(9.61)
rs41899915 ZIM2/BTA18 C→G 0.031
(0.325)
0.71
(0.88)
-0.04
(0.43)
-1.01
(0.71)
20.64
(11.32)
rs41899913 ZIM2/BTA18 C→G 0.303
(0.342)
-0.59
(0.92)
0.03
(0.45)
0.37
(0.75)
-25.22*
(12.80)
rs41899911 ZIM2/BTA18 C→T 0.026
(0.326)
0.76
(0.88)
-0.03
(0.43)
-0.97
(0.71)
21.82*
(10.97)
rs41899910 ZIM2/BTA18 C→T -0.267
(0.293)
-0.03
(0.79)
-0.13
(0.39)
0.05
(0.64)
-2.33
(9.92)
RASGRF1_p.C25039690T RASGRF1/BTA21 A→G -0.104
(0.255)
-0.85
(0.69)
-0.70*
(0.34)
1.29*
(0.55)
1.55
(8.55)
rs42194502 PHLDA2/BTA29 A→T 0.087
(0.413)
0.64
(1.12)
-0.39
(0.54)
-0.40
(0.89)
24.19
(15.76)
rs42637579 TSPAN32/BTA29 A→G 0.078
(0.268)
-0.86
(0.72)
-0.33
(0.35)
0.35
(0.58)
-12.12
(9.24)
rs42637578 TSPAN32/BTA29 C→T -0.776
(0.652)
-2.32
(1.39)
-1.20
(0.67)
-0.83
(1.11)
-29.91
(15.55)
  1. Standard errors for each trait are shown in parentheses. Levels of significance: P ≤ 0.10; *P ≤ 0.05; **P ≤ 0.01. 1A value of 1 prior to multiplication by 100 equates to 1 percentage unit.