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Table 4 SNP associations with carcass traits and fat deposition traits

From: DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle

SNP Gene/BTA Allele substitution Culled cow carcass weight (kg) Progeny carcass weight (kg) Progeny carcass conformation1 Progeny carcass fat1 Angularity2 Body condition score2
rs42940189 CALCR/BTA4 A→G -0.880
(0.965)
-0.901
(0.747)
-0.030
(0.031)
-0.014
(0.027)
-0.154
(0.156)
0.104
(0.125)
rs42940187 CALCR/BTA4 C→T 0.738
(0.840)
0.877
(0.650)
0.012
(0.027)
-0.002
(0.024)
0.294*
(0.129)
-0.239*
(0.103)
GRB10_p.A5394141C GRB10/BTA4 A→C -2.044
(1.529)
-0.453
(1.191)
0.004
(0.049)
0.071
(0.043)
0.435*
(0.216)
-0.052
(0.171)
rs43375833 GRB10/BTA4 C→T -0.333
(0.641)
0.623
(0.498)
0.047*
(0.021)
0.002
(0.018)
-0.113
(0.097)
0.171*
(0.078)
rs42575466 ZNF215/BTA15 A→G 2.118
(1.294)
1.394
(0.996)
-0.071
(0.042)
-0.020
(0.037)
0.506*
(0.217)
-0.180
(2.584)
rs42575474 ZNF215/BTA15 A→G 1.882**
(0.648)
1.168*
(0.503)
0.0174
(0.021)
-0.030
(0.018)
0.290**
(0.095)
1.805
(1.183)
PEG3_p.A64370595G PEG3/BTA18 A→G -0.065
(0.644)
-0.257
(0.500)
0.006
(0.021)
-0.030
(0.018)
0.009
(0.091)
-0.045
(0.073)
PEG3_p.C64367437T PEG3/BTA18 C→T 0.180
(0.643)
0.095
(0.499)
-0.024
(0.021)
0.023
(0.018)
0.028
(0.090)
0.018
(1.145)
rs17871322 PEG3/BTA18 A→G -0.624
(0.648)
-0.490
(0.505)
0.032
(0.021)
-0.005
(0.018)
-0.075
(0.091)
0.044
(1.138)
rs41899915 ZIM2/BTA18 C→G 0.104
(0.767)
-0.331
(0.596)
-0.020
(0.025)
-0.011
(0.022)
-0.081
(0.106)
0.987
(1.295)
rs41899913 ZIM2/BTA18 C→G 0.131
(0.832)
0.332
(0.651)
-0.013
(0.027)
0.006
(0.024)
0.244*
(0.112)
0.636
(1.409)
rs41899911 ZIM2/BTA18 C→T 0.120
(0.766)
-0.321
(0.596)
-0.024
(0.025)
-0.010
(0.022)
-0.059
(0.106)
0.946
(1.291)
rs41899910 ZIM2/BTA18 C→T 0.527
(0.685)
0.101
(0.531)
0.015
(0.022)
-0.005
(0.019)
0.121
(0.096)
-0.891
(1.158)
RASGRF1_p.C25039690T RASGRF1/BTA21 A→G -0.375
(0.584)
0.414
(0.459)
0.035†
(0.019)
0.003
(0.017)
-0.154
(0.085)
-1.540
(1.056)
rs42194502 PHLDA2/BTA29 A→T 0.064
(0.975)
-0.322
(0.762)
-0.018
(0.032)
0.007
(0.027)
0.026
(0.135)
0.178
(1.678)
rs42637579 TSPAN32/BTA29 A→G -0.076
(0.642)
-0.504
(0.504)
-0.023
(0.021)
0.015
(0.018)
0.100
(0.090)
0.499
(1.130)
rs42637578 TSPAN32/BTA29 C→T 1.918
(1.147)
0.757
(0.899)
0.031
(0.038)
-0.054
(0.039)
-0.022
(0.172)
-1.055
(2.076)
  1. Standard errors for each trait are shown in parentheses. Levels of significance: P ≤ 0.10; *P ≤ 0.05; **P ≤ 0.01. Progeny carcass fat score and progeny carcass conformation score are shown on a scale of 1.00 (low) to 15.00 (high) according to Hickey et al. [97]. 1 A value of 1 equates to 1 percentage unit. 2 Expressed in genetic standard deviations.