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Table 4 SNP associations with carcass traits and fat deposition traits

From: DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle

SNP Gene/BTA Allele substitution Culled cow carcass weight (kg) Progeny carcass weight (kg) Progeny carcass conformation1 Progeny carcass fat1 Angularity2 Body condition score2
rs42940189 CALCR/BTA4 A→G -0.880 (0.965) -0.901 (0.747) -0.030 (0.031) -0.014 (0.027) -0.154 (0.156) 0.104 (0.125)
rs42940187 CALCR/BTA4 C→T 0.738 (0.840) 0.877 (0.650) 0.012 (0.027) -0.002 (0.024) 0.294* (0.129) -0.239* (0.103)
GRB10_p.A5394141C GRB10/BTA4 A→C -2.044 (1.529) -0.453 (1.191) 0.004 (0.049) 0.071 (0.043) 0.435* (0.216) -0.052 (0.171)
rs43375833 GRB10/BTA4 C→T -0.333 (0.641) 0.623 (0.498) 0.047* (0.021) 0.002 (0.018) -0.113 (0.097) 0.171* (0.078)
rs42575466 ZNF215/BTA15 A→G 2.118 (1.294) 1.394 (0.996) -0.071 (0.042) -0.020 (0.037) 0.506* (0.217) -0.180 (2.584)
rs42575474 ZNF215/BTA15 A→G 1.882** (0.648) 1.168* (0.503) 0.0174 (0.021) -0.030 (0.018) 0.290** (0.095) 1.805 (1.183)
PEG3_p.A64370595G PEG3/BTA18 A→G -0.065 (0.644) -0.257 (0.500) 0.006 (0.021) -0.030 (0.018) 0.009 (0.091) -0.045 (0.073)
PEG3_p.C64367437T PEG3/BTA18 C→T 0.180 (0.643) 0.095 (0.499) -0.024 (0.021) 0.023 (0.018) 0.028 (0.090) 0.018 (1.145)
rs17871322 PEG3/BTA18 A→G -0.624 (0.648) -0.490 (0.505) 0.032 (0.021) -0.005 (0.018) -0.075 (0.091) 0.044 (1.138)
rs41899915 ZIM2/BTA18 C→G 0.104 (0.767) -0.331 (0.596) -0.020 (0.025) -0.011 (0.022) -0.081 (0.106) 0.987 (1.295)
rs41899913 ZIM2/BTA18 C→G 0.131 (0.832) 0.332 (0.651) -0.013 (0.027) 0.006 (0.024) 0.244* (0.112) 0.636 (1.409)
rs41899911 ZIM2/BTA18 C→T 0.120 (0.766) -0.321 (0.596) -0.024 (0.025) -0.010 (0.022) -0.059 (0.106) 0.946 (1.291)
rs41899910 ZIM2/BTA18 C→T 0.527 (0.685) 0.101 (0.531) 0.015 (0.022) -0.005 (0.019) 0.121 (0.096) -0.891 (1.158)
RASGRF1_p.C25039690T RASGRF1/BTA21 A→G -0.375 (0.584) 0.414 (0.459) 0.035† (0.019) 0.003 (0.017) -0.154 (0.085) -1.540 (1.056)
rs42194502 PHLDA2/BTA29 A→T 0.064 (0.975) -0.322 (0.762) -0.018 (0.032) 0.007 (0.027) 0.026 (0.135) 0.178 (1.678)
rs42637579 TSPAN32/BTA29 A→G -0.076 (0.642) -0.504 (0.504) -0.023 (0.021) 0.015 (0.018) 0.100 (0.090) 0.499 (1.130)
rs42637578 TSPAN32/BTA29 C→T 1.918 (1.147) 0.757 (0.899) 0.031 (0.038) -0.054 (0.039) -0.022 (0.172) -1.055 (2.076)
  1. Standard errors for each trait are shown in parentheses. Levels of significance: P ≤ 0.10; *P ≤ 0.05; **P ≤ 0.01. Progeny carcass fat score and progeny carcass conformation score are shown on a scale of 1.00 (low) to 15.00 (high) according to Hickey et al. [97]. 1 A value of 1 equates to 1 percentage unit. 2 Expressed in genetic standard deviations.