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Table 1 Sampling information and diversity values for autosomal and sex-linked loci compared to previously reported values for ZAL2 and ZAL2m alternative chromosome arrangements.

From: Contrasting population genetic patterns within the white-throated sparrow genome (Zonotrichia albicollis)

Chromosome Class Orthologous chromosome in chicken Number of loci sampled Number of chromosomes sampled Total length sampled (bp) S Silent π a ± SD
Sex chromosomes Z 9 18-22 3832 (3603)b 12 0.00050 ± 0.00009
  W 3 46-48 1729 1 0.00005 ± 0.00005
ZAL2c 3 58 16 34827 (13804)b 61 0.00072 ± 0.00007
ZAL2m, c 3 58 8 34827 (13804)b 32 0.00039 ± 0.00006
Chr2 outside of inversionsc 3 4 24 1654 (777)b 17 0.00296 ± 0.00041
Macrochromosomes 1, 2, 4 12 16-22 4773 44 0.00198 ± 0.00033
Intermediate chromosomes 6, 7, 8, 9, 10 8 18-24 3101 87 0.00485 ± 0.00054
Microchromosomes 17, 24, 27, 28 7 16-22 2083 (1980)b 136 0.01591 ± 0.00115
  1. S refers to the number of observed segregating sites.
  2. aAverage diversity is calculated from concatenated haplotypes from all loci in each category.
  3. bNumbers in parentheses indicates the number of synonymous and noncoding positions.
  4. cData previously reported in a survey of standard ZAL2, inverted ZAL2m and a region outside of the inversion polymorphism.