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Table 5 Genotype frequencies, minor allele frequencies (MAF) and significance of deviation from Hardy-Weinberg equilibrium (HWE) for the SNPs investigated within the Holstein-Friesian bull cohort

From: Polymorphisms in bovine immune genes and their associations with somatic cell count and milk production in dairy cattle

SNP1 Genbank BTA Position Genotype SNP Database Genotype Frequency (%) MAF (%) HWE
TLR4-2021 NM_174198 8 112436581 T/T rs8193069 0.04 0.18 0.03
     T/C   0.27   
     C/C   0.69   
CXCR1-777 U19947 2 110617059 C/C   0.01 0.34 0.00
     C/G   0.68   
     G/G   0.31   
TLR4-452 NM_174198 8 112435012 A/A rs8193049 0.98 0.0083 0.80815
     A/C   0.02   
TLR4-1040 NM_174198 8 112435600 A/C rs8193053 0.02 0.01 0.81
     C/C   0.98   
TLR4-1142 NM_174198 8 112435702 A/A rs8193055 1.00 0  
TLR4-1948 NM_174198 8 112436508 A/G rs8193066 0.02 0.0083 0.80837
     G/G   0.98   
CD14-1908 EU148609 7 51086277 A/A   0.84 0.08 0.25
     A/G   0.15   
     G/G   0.01   
CARD15-3168 AY518737 18 18169217 A/A rs43710288 0.25 0.49 0.18698
     A/T   0.48   
     T/T   0.27   
IL8-182 AY849380 6 91792392 A/A rs43707839 0.29 0.47 0.32
     A/G   0.48   
     G/G   0.23   
IL8-1203 AY849380 6 91793413 T/T rs41255761 1.00 0.00  
IL8-1226 AY849380 6 91793436 A/A rs41255762 0.29 0.49 0.69521
     A/G   0.49   
     G/G   0.22   
SERPINA1-164 X63129 21 59307330 A/A rs41257077 0.11 0.33 0.74
     A/G   0.45   
     G/G   0.44   
SERPINA1-269 X63129 21 59307225 C/C   0.45 0.34 0.46
     C/T   0.42   
     T/T   0.13   
SERPINA1-284 X63129 21 59307210 G/G   0.44 0.35 0.18
     G/T   0.43   
     T/T   0.13   
SERPINA1-407 X63129 21 59307087 C/C rs41257068 0.11 0.35 0.07
     C/G   0.47   
     G/G   0.42   
SERPINA1-989 X63129 21 59304656 C/C   0.43 0.34 0.94
     C/T   0.46   
     T/T   0.11   
  1. 1 SNPs genotyped by iPLEX gold technology (Sequenom)