An annotated genetic map of loblolly pine based on microsatellite and cDNA markers

BMC Genomic Data

Table 1 Summary counts of Pinus taeda marker evaluation and mapping results

Marker type	SSR eval ¹	*base*seg²	*qtl*seg²	Totalseg²	*base*map³	*qtl*map³	Both map⁴	Rnd 3 integ map⁵	Rnd 2 integ map⁶
genomic SSR	804	138	134	168	121	113	86	149	133
EST SSR	873	72	70	97	61	60	37	84	78
ESTP	n/a	69	104	159	49	65	10	104	98
RFLP	n/a	56	139	166	44	100	21	123	120
total	1677	335	447	590	275	338	154	460	429

n/a - not applicable.
¹ SSR primer pairs that were evaluated.
² Markers that segregated in the base pedigree, qtl pedigree, and either (Total seg).
³ Markers in the respective pedigree maps used for map integration.
⁴ Markers common to both base and qtl pedigrees and used for map integration.
⁵ Non-redundant marker loci in the round-3 integrated map, which included ancillary markers, as listed in Additional File 2.
⁶ Non-redundant marker loci in the round-2 integrated map, which excluded ancillary markers, as shown in Figure 1 and listed in Additional file 5.

ISSN: 2730-6844