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Table 1 Average stability rate of CNVs using same individual's data
Comparative analysis of copy number variation detection methods and database construction
Average of concordance rate
Stability rate is the concordance rate of CNVs detected using different DNA samples from the same person. Segment overlap > 80% is regarded as concordant.
All versus all comparisons (5 microarray analysis×5 microarray analysis) were done.
PennCNV: Threshold of number of probes > 20
Birdseye (part of Birdsuite): Threshold of number of probes > 20 and Lod score > 5
DNAcopy: Threshold of number of probes > 30 and absolute avg. intensity of a segment > 0.35
CGHseg: Threshold of number of probes > 40 and absolute avg. intensity of a segment > 0.35
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