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Table 1 Variants selected for genotyping

From: MCP1 haplotypes associated with protection from pulmonary tuberculosis

MCP1

variant

rs #

Primer oligonucleotides

Sensor/Anchor oligonucleotides

-97569

C/G

rs9891330

F-TCTGATGCAGACAGCGAG

S-GCCTCCCCCACCCCCA

   

R-CACCTGGAGTCCCAGTT

A-ATAGCTGTCGGGAGAGTCTGTATTTGAAAGAGAA

-38600

C/T

rs8075337

F-CTTCTGTGAGCATTGGGT

S-ACTTCTTTTGCTGTGTTTTATTTTATTTTC

   

R-AGAAACAAAAATTAGGGCATCTAC

A-CCAACATCTGGATTTCTTCAGGGACAGTTTACATT

-1727

A/T

rs3917886

F-TGGGATTCTCCAGGAAACC

S-GAAGAAGAGATACTGGAATGGAAACATCC

   

R-ACCCAGCTTTCGTTAGG

A-GGGTGGGAGTCTCAGCACATCTACTATTCTGTC

Int1:96

C/G

rs41507946

F-TAAGGCCCCCTCTTCTTC

S-CCCACAGTCTTGCTTTAACGCTAC

   

R-CTGTGTGGTTGGGCTCA

A-TTTCCAAGATAAGGTGACTCAGAAAAGGACAAGGG

Int1:554-567

W/D

rs3917887

F-TCCCCAGCTGATCTTCC

S-TTTAACCGCTCCTCCTTC

   

R-TGACTCAGTTTCCTATGCTGTA

A-GTCCGTCTTAATGACACTTGTAGGCATTATCTAG

+1542

C/T

rs13900

F-GACCACCTGGACAAGCA

S-TAGCTTTCCCCAGACACCCTGTTTTA

   

R-ATTACTTAAGGCATAATGTTTCACATC

A-CACAACCCAAGAATCTGCAGCTAACTTATTTTCCC

+2413

G/T

rs3917890

F-ATGAGACCTGAACTTATTATTTA

S-GATCATTAAGAAAGGAGAAGGAAGAGTGG

   

R-TTCACCCTAACATTCAAATC

A-AGCAAATACCTGGAGGTAGAAATGGTGATGATGTGTAC

+2580

A/T

rs41343046

F-GCCCACACCAATGTCAA

S-AAGGGATTTGAATGTTAGGGTGAAAAGATA

   

R-CTGAATCTCTAAACATGGCAC

A-ACTCAACTCTGTAGGTTAAAAGGAAACGTTGAGAA

  1. F, forward primer; R, reverse primer; S, sensor; A, anchor; Int1, intron 1; D, deletion; W, wildtype