Table 2 Allelic associations
From: MCP1 haplotypes associated with protection from pulmonary tuberculosis
MCP1 | allele | cases n (frequency) | controls n (frequency) | OR | CI | Pnom | Pcorr |
|---|---|---|---|---|---|---|---|
-97569 | C | 1497 (0.38) | 1745 (0.38) | 1 | 0.99 | ||
G | 2471 (0.62) | 2889 (0.62) | 1.00 | [0.92-1.09] | |||
-38600 | T | 1730 (0.44) | 2107 (0.46) | 1 | |||
C | 2228 (0.56) | 2463 (0.54) | 1.10 | [1.01-1.20] | 0.031 | ||
-2581* | A | 3256 (0.83) | 3692 (0.80) | 1 | |||
G | 672 (0.17) | 932 (0.20) | 0.81 | [0.73-0.91] | 0.0002 | 0.0012 | |
-1727 | A | 113 (0.03) | 149 (0.03) | 1 | |||
T | 3525 (0.97) | 4133 (0.97) | 1.14 | [0.88-1.45] | 0.32 | ||
-362* | G | 2266 (0.58) | 2441 (0.53) | 1 | |||
C | 1670 (0.42) | 2161 (0.47) | 0.83 | [0.76-0.90] | 0.000019 | 0.00015 | |
Int1:96 | C | 967 (0.29) | 1092 (0.26) | 1 | |||
G | 2401 (0.71) | 3128 (0.74) | 0.87 | [0.78-0.96] | 0.0055 | ||
Int1:554-567 | W | 2432 (0.61) | 2646 (0.57) | 1 | |||
D | 1586 (0.39) | 2028 (0.43) | 0.85 | [0.78-0.92] | 0.00014 | 0.00098 | |
+1542 | T | 711 (0.18) | 933 (0.20) | 1 | |||
C | 3291 (0.82) | 3745 (0.80) | 1.16 | [1.04-1.29] | 0.008 | ||
+2413 | T | 134 (0.07) | 198 (0.07) | 1 | |||
G | 1750 (0.93) | 2652 (0.93) | 0.97 | [0.77-1.22] | 0.81 | ||
+2580 | A | 397 (0.10) | 454 (0.10) | 1 | |||
T | 3591 (0.90) | 4184 (0.90) | 0.97 | [0.84-1.12] | 0.71 |