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Table 2 Numbers of overlapping SNPs between HapMap project and four genotyping platforms in the extended MHC region 1

From: Empirical evaluations of analytical issues arising from predicting HLA alleles using multiple SNPs

 

HapMap

Affy 500K

Affy 6.0

Illumina 550K

Illumina 1.2M

HapMap

10600

1307

1979

1762

4382

Affy 500K

 

1422

1363

272

610

Affy 6.0

  

2325

459

988

Illumina 550K

   

1944

1885

Illumina 1.2M

    

6303

  1. 1 The range of extended MHC region is chr6: 28,799,220 - 34,204,868 [12].
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BMC Genomic Data

ISSN: 2730-6844

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