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Table 2 Comparison of the SNP selection methods

From: Evaluation of approaches for identifying population informative markers from high density SNP Chips

 

delta

Global Wright's FST

Pairwise Wright's FST

Global W&C'S FST

Pairwise W&C'S FST

PCA [1:8]

delta

 

0.589

0.884

0.370

0.819

0.928

global Wright's F ST

98

 

0.847

0.462

0.821

0.682

pairwise Wright's F ST

381

151

 

0.448

0.952

0.888

global W&C F ST

59

49

63

 

0.461

0.408

pairwise W&C F ST

306

156

367

67

 

0.810

PCA [1:8]

273

101

274

66

229

 
  1. The upper-triangle contains the Spearman rank's correlation results between each 40,483 SNPs ranked for information content by each selection method. The lower-triangle contains the amount of overlap for the top 500 ranked SNP markers between each selection method.