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Table 2 Comparison of the SNP selection methods

From: Evaluation of approaches for identifying population informative markers from high density SNP Chips

  delta Global Wright's FST Pairwise Wright's FST Global W&C'S FST Pairwise W&C'S FST PCA [1:8]
delta   0.589 0.884 0.370 0.819 0.928
global Wright's F ST 98   0.847 0.462 0.821 0.682
pairwise Wright's F ST 381 151   0.448 0.952 0.888
global W&C F ST 59 49 63   0.461 0.408
pairwise W&C F ST 306 156 367 67   0.810
PCA [1:8] 273 101 274 66 229  
  1. The upper-triangle contains the Spearman rank's correlation results between each 40,483 SNPs ranked for information content by each selection method. The lower-triangle contains the amount of overlap for the top 500 ranked SNP markers between each selection method.