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Table 3 Association of markers with different internal inclusion traits in the confirmation study

From: Mapping of QTL affecting incidence of blood and meat inclusions in egg layers

SNP ID/marker

Genomic position

Marker informative in

Association found in

Trait and p-values

rs14762832

31,855,282

LB

LB

Score LB (p < 0.001)

rs16766794

31,955,874

LB

  

rs16766752

32,044,210

LB

  

rs13795687

32,122,845

LB

  

rs16766685

32,276,606

LB

  

rs16766334

33,022,548

LB

 

score LB (p < 0.05)

rs16766274

33,092,178

LB

  

rs16766257

33,167,074

LB

  

rs14761556

33,443,086

LB

  

rs14761487

33,508,907

LB

LB

scoreLB (p < 0.01)

groupLB (p = 0.02)

number of spotsLB (p < 0.05)

rs14761341

33,749,060

LB, Hy

  

rs14761267

33,832,110

LB, Hy

LB, Hy

numberLB (p < 0.02)

size LB (p < 0.02)

MSHy (p < 0.05)

rs14761196

33,996,581

Hy

Hy

MSHy (p < 0.01)

BLHy (p < 0.04)

MCW241

34,264,059

LB,Hy

LB, Hy

MSHy (p < 0.001)

BLHy (p < 0.001)

scoreLB (p < 0.01)

s107245031

34,315,708

LB

LB

groupLB (p < 0.001)

number of spotsLB p < 0.01)

sizeLB (p < 0.001)

rs147632252

34,275,496

LB, Hy

  

miRNA-1556

34,315,890

LB

LB

groupLB (p < 0.002)

number of spotsLB (p < 0.002)

sizeLB (p < 0.002)

rs16767662

34,996,069

   

rs16110443

36,236,398

   

rs14764985

36,533,455

LB

LB

groupLB (p < 0.03)

number of spotLB (p < 0.02)

rs16111109

36,959,973

   

rs14766124

38,170,684

LB

  

rs16132985

41,098,862

LB

  
  1. Markers (their informativity and relative genomic positions) in each population can be found in the 3rd column (LB = Lohmann Brown, Hy = Hy-Line). The population and trait showing the association (corresponding p-values in parenthesis) are indicated in the 4th and 5th columns.
  2. 1 ZO-2 snupe
  3. 2 not mapped in WASHUC2, position based on Groenen et al. 2009 [24].