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Table 1 Association mapping results

From: Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle

Trait

Analysis

Position (bp)

LRT score

SNPs

CM1

SM

90,075,263

42

rs42766480

CM1

GAB

90,670,190 - 90,725,368

37

ss61522200 to ss290490303

CM1

GAM

90,642,598 - 90,670,190

42

rs29024027 to ss61522200

CM2

SM

89,625,793

26

ss290490281

CM2

GAB

89,623,896 - 89,625,793

23

ss61524338 to ss290490281

CM2

GAM

89,623,896 - 89,668,440

28

ss61524338 to ss86278591

CM3

SM

90,075,263

26

rs42766480

CM3

GAB

90,670,190 - 90,725,368

18

ss61522200 to ss290490303

CM3

GAM

90,642,598 - 90,670,190

19

rs29024027 to ss61522200

PY

SM

88,410,501

139

ss86217862

PY

SM

88,413,712

139

ss86217864

PY

GAB

88,333,706 - 88,422,590

78

ss86217849 to ss86217869

PY

GAM

88,333,706 - 88,427,761

78

ss86217849 to ss117968525

  1. Highest test scores from single-marker (SM) and haplotype (GAB and GAM) association mapping for protein yield (PY) and clinical mastitis in the periparturient period of first (CM1), second (CM2) and third lactation (CM3). Trait, analysis, chromosome position, Likelihood-ratio test (LRT) score and SNPs are presented for the highest scoring SNP or haplotype block from each analysis.