Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle

Table 3 Polymorphisms associated with protein yield

Btau_4.0 (bp)	Gene	Region	TPP *	NT [+/-]	TP [+/-]	PP (bp)
88331023	CSN2	Exon	125	[T/C] ^†	P
88331153	CSN2	Exon	82	[C/A] ^‡	[P/H]
88338754	CSN2	Promoter		[G/A]		-367
88339252	CSN2	Promoter		[T/A]		-865
88409015	CSN1S2	Promoter		[C/A]		-7
88410860	CSN1S2	UTR		[C/T]

Btau_4.0 position [31], gene, description of region (promoter, exon or UTR), translated protein position (TPP), polymorphic nucleotide (NT) alleles denoted as positive or negative [+/-], polymorphic translated protein (TP) alleles denoted as positive or negative [+/-] and promoter position (PP) relative to transcription initiation site. * Translated protein position in Ref NM_181008.2 for CSN2 and Ref NM_ 174528.2 for CSN1S2. † Polymorphism previously described in Lien et al. [5]. ‡Polymorphism previously described in Nilsen et al. [7].

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