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Table 2 Average Linkage Disequilibrium (r2) between adjacent SNP markers.

From: Accuracy of genomic selection in simulated populations mimicking the extent of linkage disequilibrium in beef cattle

   POP1 (40 k) POP2 (800 k)
BTA Length
(Mb)
Number
of
SNP
Average r2
(SD)
Number
of
SNP
Average r2
(SD)
1 146 2712 0.25(0.25) 47539 0.33(0.30)
2 126 2205 0.25(0.25) 38629 0.33(0.30)
3 116 2060 0.24(0.25) 38824 0.31(0.29)
4 111 2011 0.23(0.24) 37889 0.30(0.28)
5 119 1749 0.24(0.24) 32230 0.32(0.30)
6 112 1962 0.26(0.26) 38405 0.32(0.29)
7 101 1687 0.25(0.26) 33209 0.31(0.29)
8 104 1748 0.24(0.25) 33833 0.32(0.30)
9 95 1369 0.26(0.26) 30472 0.31(0.29)
10 96 1413 0.27(0.26) 30513 0.32(0.29)
11 102 1551 0.25(0.25) 33513 0.30(0.28)
12 78 1070 0.24(0.26) 23437 0.31(0.29)
13 83 1249 0.25(0.25) 27385 0.32(0.30)
14 82 1290 0.25(0.25) 27452 0.33(0.30)
15 75 1081 0.27(0.27) 22531 0.33(0.30)
16 73 1150 0.24(0.25) 22891 0.33(0.30)
17 70 1195 0.27(0.26) 23281 0.31(0.29)
18 63 987 0.23(0.23) 19391 0.32(0.29)
19 63 966 0.25(0.26) 20719 0.31(0.29)
20 68 1133 0.24(0.24) 21775 0.35(0.31)
21 63 1032 0.25(0.26) 19720 0.32(0.30)
22 60 946 0.26(0.26) 19212 0.31(0.29)
23 49 772 0.25(0.26) 15958 0.31(0.29)
24 60 901 0.24(0.24) 18087 0.32(0.30)
25 42 749 0.25(0.25) 14861 0.31(0.29)
26 48 840 0.25(0.26) 15999 0.30(0.30)
27 43 670 0.26(0.26) 13563 0.32(0.30)
28 40 704 0.25(0.26) 13407 0.32(0.30)
29 45 806 0.26(0.26) 14420 0.33(0.30)
Overall 2333 38008 0.25(0.26) 749145 0.32(0.30)
  1. The results are for each of the 29 autosomes in the recent generations for moderate heritability (0.25) and POP1 (40 k) and POP2 (800 k) over 10 replicates. SD: Standard Deviation.