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Table 3 Parameterization of one-locus models (4), (5), (6) when m = 3.

From: On coding genotypes for genetic markers with multiple alleles in genetic association study of quantitative traits

Codings

Relationships

Allele

μ = G 3 3 α 1 = G 1 3 - G 3 3 , α 2 = G 2 3 - G 3 3 δ 1 1 = G 1 1 + G 3 3 - 2 G 1 3 δ 2 2 = G 2 2 + G 3 3 - 2 G 2 3 δ 1 2 = G 1 2 + G 3 3 - G 1 3 - G 2 3

F

τ = G 1 1 + G 2 2 2 a 1 = G 1 1 - G 3 3 2 , a 2 = G 2 2 - G 3 3 2 d 1 1 = G 1 3 - G 1 1 + G 3 3 2 d 2 2 = G 2 3 - G 2 2 + G 3 3 2 d 1 2 = G 1 2 + G 3 3 - G 1 3 - G 2 3

Allele-count

π 0 = G 3 3 π 1 = G 1 3 - G 3 3 , π 2 = G 2 3 - G 3 3 η 1 1 = G 1 1 - G 3 3 η 2 2 = G 2 2 - G 3 3 η 1 2 = G 1 2 + G 3 3 - G 1 3 - G 2 3