Association of an ACSL1 gene variant with polyunsaturated fatty acids in bovine skeletal muscle

BMC Genomic Data

Table 1 Identified SNPs within the ACSL1 locus and positions on the bovine genome assemblies

SNP ID relative to coding sequence*	Gene region	Variation relative to reference sequence	Position on NW_001494406.2 (Btau4.2)	Position on NW_003104605.1 (UMD_3.1)	Allele frequency	SNP accession number (dbSNP, NCBI ss#)
c.-569_570del AC	Promoter	Indel TG	1918795	389858	Not analyzed	ss469271165
c.-224_225del GG	Promoter	Indel (C)_5-7	1918451	389615	Not analyzed	ss469271166
c.-196G>A	Promoter	C>T	1918422	3894586	Not analyzed	ss469271167
c.-167G>C	Promoter	C>G	1918393	3894557	Not analyzed	ss469271168
c.-151G>C	Promoter	C>G	1918377	3894541	Not analyzed	ss469271169
c.-122G>A	Promoter	C>T	1918348	3894512	0.67 (G)/0.33 (A)	ss469271170
c.481-233A>G	Intron 5	T>C	1876389	3852106	0.73 (A)/0.27 (G)	ss469271171
c.516C>G	Exon 6	G>C	1876121	3852284	0.57 (C)/0.43 (G)	ss469271172
c.580+114C>G	Intron 6	G>C	1875943	3852552	0.33 (C)/0.67 (G)	ss469271173
c.584A>G	Exon 7	T>C	1875838	3852001	0.07 (G)/0.94 (A)	ss469271174
c.845-58T>G	Intron 9	A>C	1871919	3848082	0.75 (T)/0.21 (G)5	ss469271175
c.1267-100C>T	Intron 13	G>A	1864210	3840373	0.24 (T)/0.76 (C)	ss469271176
c.1525-131C>T	Intron 16	G>A	1859370	3835533	Not analyzed	ss469271177
c.1938T>G	Exon 20	A>C	Not annotated	3831586	0.75 (T)/0.25 (G)	ss469271178
c.1959+56G>A	Intron 20	C>T	Not annotated	3831509	0.24 (A)/0.76 (G)	ss469271179
c.2099+1023del A	3'UTR	Indel A	1853870	3829944	Not analyzed	ss469271180
c.2099+1030 C>A	3'UTR	C>A	1853863	3829937	Not analyzed	ss469271181
c.2099+1032 A>C	3'UTR	A>C	1853861	3829935	Not analyzed	ss469271182
c.2099+1034 C>A	3'UTR	C>A	1853859	3829933	Not analyzed	ss469271183

*SNP nomenclature according to the translation start codon ATG, reference sequence NM_001076085.1. SNPs marked in bold were included in the association analysis. Genomic positions of the SNPs were inferred from the current versions of the refererence and alternative bovine genome assemblies Btau4.2 and UMD_3.1 available at NCBI (http://www.ncbi.nlm.nih.gov/genome/guide/cow/index.html).

ISSN: 2730-6844