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Table 1 Average number of SNPs, loci and genes per phenotypes used in this study with significant association p values and associated annotated genes in Gentrepid

From: Analysis of genome-wide association study data using the protein knowledge base

    Level
    WS MWS MHS HS
    p ≤ 1e-3 p ≤ 1e-4 p ≤ 1e-5 p < 5e-7
SNPs    804.29 160.29 56.71 29.14
Loci    446.86 84.43 18.71 7.29
Total Genes BY 1 Mbp 3875.57 870.86 175.29 87.43
   0.5 Mbp 2140.00 477.29 106.00 57.29
   0.1 Mbp 654.57 148.43 43.71 23.00
  NN Adjacent 1412.14 292.43 62.29 26.14
   Nearest 452.86 91.00 22.29 10.14
   Resident 198.71 42.57 11.43 5.43
Annotated Genes BY 1 Mbp 2285.29 528.86 116.43 61.57
   0.5 Mbp 1275.57 300.43 73.14 41.57
   0.1 Mbp 426.43 103.43 32.00 16.57
  NN Adjacent 803.14 172.00 40.71 17.57
   Nearest 285.71 59.00 15.57 6.14
   Resident 155.29 33.43 8.86 3.57
  1. Column abbreviations: HS, highly significant; MHS, moderately-high significance; MWS, moderately-weak significance; WS, weakly significant. Row abbreviations: SNPs, average number of implicated SNPs per phenotype; Loci, average number of SNP clusters per phenotype; "Total Genes", the average number of genes per phenotype in the designated constructed pseudo-intervals; "Annotated Genes", the average number of genes per phenotype in the designated constructed pseudo-intervals with Gentrepid annotations.