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Table 1 Average number of SNPs, loci and genes per phenotypes used in this study with significant association p values and associated annotated genes in Gentrepid

From: Analysis of genome-wide association study data using the protein knowledge base

   

Level

   

WS

MWS

MHS

HS

   

p ≤ 1e-3

p ≤ 1e-4

p ≤ 1e-5

p < 5e-7

SNPs

  

804.29

160.29

56.71

29.14

Loci

  

446.86

84.43

18.71

7.29

Total Genes

BY

1 Mbp

3875.57

870.86

175.29

87.43

  

0.5 Mbp

2140.00

477.29

106.00

57.29

  

0.1 Mbp

654.57

148.43

43.71

23.00

 

NN

Adjacent

1412.14

292.43

62.29

26.14

  

Nearest

452.86

91.00

22.29

10.14

  

Resident

198.71

42.57

11.43

5.43

Annotated Genes

BY

1 Mbp

2285.29

528.86

116.43

61.57

  

0.5 Mbp

1275.57

300.43

73.14

41.57

  

0.1 Mbp

426.43

103.43

32.00

16.57

 

NN

Adjacent

803.14

172.00

40.71

17.57

  

Nearest

285.71

59.00

15.57

6.14

  

Resident

155.29

33.43

8.86

3.57

  1. Column abbreviations: HS, highly significant; MHS, moderately-high significance; MWS, moderately-weak significance; WS, weakly significant. Row abbreviations: SNPs, average number of implicated SNPs per phenotype; Loci, average number of SNP clusters per phenotype; "Total Genes", the average number of genes per phenotype in the designated constructed pseudo-intervals; "Annotated Genes", the average number of genes per phenotype in the designated constructed pseudo-intervals with Gentrepid annotations.
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BMC Genomic Data

ISSN: 2730-6844

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