From: A comparison of statistical methods for genomic selection in a mice population
Splitting | Method | Trait | ||||
---|---|---|---|---|---|---|
W6W | WGS | BL | %CD8+ | CD4+/CD8+ | ||
Within | POL | 1.21 | 0.91 | 0.89 | 1.03 | 0.97 |
emBayesB | 1.43 | 1.57 | 3.70 | 1.65 | 1.55 | |
RR_GBLUP | 0.95 | 0.70 | 0.88 | 0.66 | 0.75 | |
SS_BY | 0.79 | 0.66 | - | 0.60 | 0.72 | |
SS_ABS | 0.72 | 0.49 | 0.49 | 0.64 | 0.72 | |
RKHS | 1.08 | 0.95 | 0.89 | 1.06 | 1.26 | |
SVR | 1.24 | 0.91 | 0.68 | 1.16 | 1.18 | |
BayesCpi | 0.55 | 0.29 | 0.40 | 0.17 | 0.29 | |
BayesC | 0.18 | 0.12 | 0.21 | 0.19 | 0.20 | |
LASSO | 0.93 | 1.01 | 1.08 | 1.00 | 1.07 | |
RF | 1.48 | 1.10 | 0.78 | 1.12 | 1.11 | |
Across | POL | - | - | - | - | - |
emBayesB | 0.46 | 0.90 | 1.47 | 1.43 | 1.33 | |
RR_GBLUP | 0.37 | 0.49 | 0.52 | 0.46 | 0.52 | |
SS_BY | 0.30 | 0.46 | - | 0.42 | 0.52 | |
SS_ABS | 0.29 | 0.30 | 0.32 | 0.50 | 0.52 | |
RKHS | 0.55 | 0.95 | 0.75 | 1.21 | 1.36 | |
SVR | 0.61 | 0.89 | 0.62 | 1.42 | 1.27 | |
BayesCpi | 0.22 | 0.21 | 0.14 | 0.17 | 0.24 | |
BayesC | 0.07 | 0.08 | 0.11 | 0.18 | 0.15 | |
LASSO | 0.38 | 0.71 | 0.56 | 0.98 | 1.01 | |
RF | 0.72 | 1.22 | 0.65 | 1.27 | 1.22 |