Association of single nucleotide polymorphic sites in candidate genes with aggressiveness and deoxynivalenol production in Fusarium graminearum causing wheat head blight

Table 1 Sequenced regions of candidate genes and its related nucleotide polymorphism

Gene ID^a	Sequenced region relative to the ATG	No. of SNPs detected	No. of singletons	Nucleotide diversity (%)^b	No. of SNPs with allele frequency > 0.1
TRI1 (FGSG_00071)	311-1065	73	54	2.5	3
TRI6 (FGSG_16251)	35-558	36	29	1.3	0
TRI5 (FGSG_03537)	479-1080	70	38	5.3	4
TRI10 a (FGSG_03538)	31-678	123	80	6.6	0
TRI10 b (FGSG_03538)	760-1273	34	29	0.9	1
TRI14 (FGSG_03543)	277-976	43	23	2.9	0
MetAP1 (FGSG_01397)	200-934	106	41	8.8	25
Erf2 (FGSG_08531)	1193-1825	80	42	6.0	11

^a The given gene ID is the entry number of the MIPS F. graminearum genome database (FGDB; Wong et al. 2011)
^b Nucleotide diversity is the frequency of SNPs (without singletons) relative to the total length of the sequenced gene region

ISSN: 2730-6844