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Table 1 Syntenies found between rainbow trout linkage groups and medaka, stickleback and zebrafish chromosomes (figures correspond to chromosomes numbers of medaka, stickleback and zebrafish)

From: A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts

Rainbow trout linkage group Arm number Syntenic linkage group in
   medaka stickleback zebrafish
RT01 1 12, 13, 14 groupVII, groupXIV 10, 15, 21
RT02 2 01, 08 groupIX, groupXI 01, 03, 06, 13, 22
RT03 2 10, 11 groupIV, groupX 12, 14, 16, 17, 19
RT04_25 2 01, 02, 10, 22 groupI, groupIV, groupXV 14, 17
RT05 2 21 groupXVI 09, 22
RT06 2 04, 06, 15, 19 groupV, groupVI, groupVIII, groupXIX 13, 17, 18, 22, 25
RT07 2 06, 17, 20, 23 groupIV, groupXXI 02, 04, 24
RT08 2 04, 12, 17 groupVIII, groupXIV 02, 06, 10, 17, 21, 22
RT09 2 08, 12, 14 groupVII, groupXI, groupXIII 03, 05, 10, 17, 21
RT10 2 03, 06, 09 groupII, groupXIII, groupXIX 05, 07, 08, 10, 18, 25
RT11 1 13 groupI 15, 17, 18
RT12 2 02, 04, 05, 07, 10, 21, 22 groupI, groupVIII, groupXII, groupXV, groupXVI, groupXVII 01, 02, 06, 08, 09, 11, 21, 22, 23
RT13 1 17 groupIII 02, 08, 17, 20
RT14 2 01, 02, 22 groupI, groupIX, groupXV 01, 17
RT15 2 06, 18, 23 groupIV, groupVII 04, 07
RT16 2 02, 03, 07, 11, 21, 22 groupI, groupII, groupX, groupXV, groupXVI 01, 02, 06, 09, 11, 12, 19, 22
RT17 2 15, 19 groupV, groupVI 07, 12
RT18 1 03, 06 groupII, groupXIX 07, 25
RT19 2 05, 09, 20, 21 groupXIII, groupXXI 02, 05, 08, 09, 11, 21
RT20 2 01, 14 groupI, groupVII, groupIX 01, 10, 17, 21
RT21 2 05, 07, 18 groupVII, groupXII 07, 08, 11, 23
RT22 2 07, 15, 19 groupV, groupVI, groupXII 08, 12, 13, 17, 23
RT23 2 17, 24 groupIII, groupXVIII 02, 11, 20
RT24 2 04, 05, 06, 08, 24 groupVIII, groupXI, groupXVIII, groupXIX 03, 06, 11, 17, 20, 23, 25
RT26 1 13 groupI 15, 18
RT27 2 06, 16 groupXIX, groupXX 04, 15, 16, 18, 25
RT29 2 01, 03, 05, 06, 07, 08, 15 groupVII, groupIX, groupXI, groupXII, groupXVII 01, 03, 05, 06, 08, 11, 13, 22, 23
RT30 1 15, 19 groupV, groupVI 05, 12, 13, 17
RT31 2 16, 21 groupXVI, groupXX 07, 09, 16
Total 52 87 74 126
  1. Details are given in Additional file 5, Additional file 6, and Additional file 7