Table 1 Yeast strains
From: Loss of nonsense mediated decay suppresses mutations in Saccharomyces cerevisiae TRA1
Strain number | Description | TRA1plasmid | Reference |
|---|---|---|---|
CY1021 | Isogenic to KY320 except tra1Δ | YCplac22-myc-TRA1 | [2] |
CY2706 | Isogenic to CY1021 | YCplac22-myc 9 -TRA1 | [23] |
CY3003 | Isogenic to CY1021 | YCplac22-myc 9 -tra1-L3733A | [23] |
CY4018 | Isogenic to CY1021 | YCplac22u-myc 9 -tra1-L3733A | This study |
CY5522 | Isogenic to CY3003 except MATα | YCplac22-myc 9 -tra1-L3733A | This study |
CY5557 | Diploid cross of CY2706 and CY4413 | YCplac22-myc 9 -TRA1 | This study |
CY5558 | Diploid cross of CY4018 and CY5522 | YCplac22-myc 9 -tra1-L3733A | This study |
CY5579 | isogenic to CY4018 except es2 (upf1 1-164 ) | YCplac22u-myc 9 -tra1-L3733A | This study |
CY5580 | isogenic to CY4018 except es12 | YCplac22u myc 9 -tra1- L3733A | This study |
CY5581 | isogenic to CY4018 except es35 | YCplac22u myc 9 -tra1- L3733A | This study |
CY5582 | isogenic to CY4018 except es36 | YCplac22u myc 9 -tra1- L3733A | This study |
CY5583 | isogenic to CY4018 except es37 | YCplac22u myc 9 -tra1- L3733A | This study |
CY5584 | isogenic to CY4018 except es38 | YCplac22u myc 9 -tra1- L3733A | This study |
CY5585 | isogenic to CY4018 except es39 | YCplac22u-myc 9 -tra1-L3733A | This study |
CY5586 | isogenic to CY4018 except es40 | YCplac22u-myc 9 -tra1-L3733A | This study |
CY5587 | isogenic to CY4018 except es41 | YCplac22u-myc 9 -tra1- L3733A | This study |
CY5588 | isogenic to CY4018 except es42 | YCplac22u-myc 9 -tra1-L3733A | This study |
CY5750 | isogenic to CY4018 except es43 | YCplac22u-myc 9 -tra1-L3733A | This study |
CY5666 | Isogenic to CY5522 except es2 (upf11-164) | YCplac22-myc 9 -tra1-L3733A | This study |
CY5758 | Isogenic to CY5522 except es38 | YCplac22-myc 9 -tra1-L3733A | This study |
CY5603 | Isogenic to CY5522 except es41 | YCplac22-myc 9 -tra1-L3733A | This study |
CY5688 | Isogenic to CY2706 except es2 (upf11-164) | YCplac22u-myc 9 -TRA1 | This study |
CY5690 | Isogenic to CY2706 except es38 | YCplac22u-myc 9 -TRA1 | This study |
CY5691 | Isogenic to CY2706 except es41 | YCplac22u-myc 9 -TRA1 | This study |
KY320 | MATa ura3-52 ade2-101 trp1-Δ1 lys2-801 his3-Δ200 leu2::PET56 |  | [66] |
CY4413 | MATα ura3-52 ade2-101 trp1-Δ1 lys2-801 his3-Δ200 leu2::PET56 |  |  |
CY2222 | MATa can1Δ::STE2pr-SpHIS5 lyp1Δ his3Δ 1 leu2Δ0 ura3Δ0 met10 LYS2+ TRA1-SRR3413-URA3 |  | [69] |
BY4741 | MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 |  | [70] |
BY4742 | MATα his3Δ1 leu2Δ0 lys2Δ0 ura3Δ0 |  | [70] |
BY2940 | MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 eaf7::KanMX |  | [70] |
BY4282 | MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 ada2::KanMX |  | [70] |
BY7143 | MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 eaf3::KanMX |  | [70] |
BY41905 | MATa/α his3Δ1/his3Δ1 leu2Δ0 lys2Δ0/LYS2 MET15/met15Δ0 ura3Δ0/ura3Δ0 + can1Δ::LEU2 + -MFA1pr-HIS3/CAN1+ upf2Δ::KanMX |  | [71] |
BY44702 | MATa/α his3Δ1/his3Δ1 leu2Δ0 lys2Δ0/LYS2 MET15/met15Δ0 ura3Δ0/ura3Δ0 can1Δ::LEU2 + -MFA1pr-HIS3/CAN1+ upf3Δ::KanMX |  | [71] |
BY46214 | MATa/α his3Δ1/his3Δ1 leu2Δ0 lys2Δ0/LYS2 MET15/met15Δ0 ura3Δ0/ura3Δ0 can1Δ::LEU2 + -MFA1pr-HIS3/CAN1+ upf1Δ::KanMX |  | [71] |
CY4350 | MATa ura3Δ0 his3Δ0 leu2Δ0 TRA1-F3744A-HIS3 |  | [23] |
CY4353 | MATa ura3Δ0 his3Δ0 leu2Δ0 TRA1-HIS3 |  | [23] |
CY4103 | MATa ura3Δ0 his3Δ0 leu2Δ0 TRA1-L3733A-HIS3 |  | [23] |
CY5932 | MATa his3Δ1 leu2Δ0 ura3Δ0 upf1Δ::KanMX |  | This study |
CY5934 | MATa his3Δ1 leu2Δ0 ura3Δ0 upf2Δ::KanMX |  | This study |
CY5936 | MATa his3Δ1 leu2Δ0 ura3Δ0 upf3Δ::KanMX |  | This study |
CY5937 | MATα his3Δ1 leu2Δ0 ura3Δ0 upf3Δ::KanMX |  | This study |
CY5938 | MATa his3Δ1 leu2Δ0 ura3Δ0 upf1Δ::nat1 |  | This study |
CY5939 | MATα his3Δ1 leu2Δ0 ura3Δ0 upf1Δ::nat1 |  | This study |
CY5940 | MATα ura3Δ0 his3Δ0 leu2Δ0 URA3-Flag 5 -TRA1 |  | This study |
CY5967 | MATα ura3Δ0 his3Δ0 leu2Δ0 tra1-L3733A-HIS3 |  | This study |
CY5968 | MATα his3Δ1 leu2Δ0 ura3Δ0 upf1Δ::KanMX |  | This study |
CY5972 | MATa ura3Δ0 his3Δ0 leu2Δ0 tra1-L3733A-HIS3 upf1Δ::KanMX |  | This study |
CY5976 | MATα his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 eaf7::KanMX upf1Δ::nat1 |  | This study |
CY5979 | MATα his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 ada2::KanMX upf1Δ::nat1 |  | This study |
CY5980 | MATα his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 eaf3::KanMX upf1Δ::nat1 |  | This study |
CY5983 | MATa ura3Δ0 his3Δ0 leu2Δ0 tra1-L3733A-HIS3 upf3Δ::KanMX |  | This study |
CY5996 | MATa ura3Δ0 his3Δ0 leu2Δ0 tra1-L3733A-HIS3 upf2Δ::KanMX |  | This study |
CY6004 | MATa ura3Δ0 his3Δ0 leu2Δ0 URA3-Flag5-tra1-L3733A-HIS3 |  | This study |
CY6005 | MATa ura3Δ0 his3Δ0 leu2Δ0 URA3-Flag5-tra1-L3733A-HIS3 upf1Δ::KanMX |  | This study |
CY6030 | MATa ura3Δ0 his3Δ0 leu2Δ0 tra1-F3744A-HIS3 upf1Δ::KanMX |  | This study |
CY6102 | MATα ura3Δ0 leu2Δ0 tra1-SRR3413-URA3 upf1Δ::KanMX |  | This study |