Step No. | Description | Stage | No. Jobs using yeast data | Av. Time/Job on yeast data Hours:min:sec | Actual time from start to finish | Time saved via parallelization |
---|---|---|---|---|---|---|
1 | Lasso stage 1 | Preprocessing SNPs | 23 | 00:00:25 | 00:02:59 | 00:06:36 |
2 | Lasso validation error | Preprocessing SNPs | 1 | 00:02:14 | 00:02:14 | 00:00:00 |
3 | Lasso stage 2 | Preprocessing SNPs | 23 | 00:01:16 | 00:03:40 | 00:25:34 |
4 | Lasso validation error | Preprocessing SNPs | 1 | 00:00:39 | 00:00:39 | 00:00:00 |
5 | Marker Processing | Preprocessing SNPs | 1 | 00:00:10 | 00:00:10 | 00:00:00 |
6 | Connected component analysis | Preprocessing traits | 1 | 00:00:56 | 00:00:56 | 00:00:00 |
7 | Spectral clustering | Preprocessing traits | 118 | 00:00:56 | 00:06:44 | 01:43:03 |
8 | Trait Processing | Preprocessing traits | 1 | 00:06:02 | 00:06:02 | 00:00:00 |
9 | GFlasso stage 1 | GFlasso optimization | 130 | 00:51:34 | 01:41:36 | 110:02:30 |
10 | GFlasso validation error stage 1 | GFlasso optimization | 1 | 01:43:01 | 01:43:01 | 00:00:00 |
11 | GFlasso stage 2 | GFlasso optimization | 130 | 05:49:08 | 29:27:45 | 726:59:05 |
12 | GFlasso validation error stage 2 | GFlasso optimization | 1 | 00:45:26 | 00:45:26 | 00:00:00 |
13 | GFlasso stage 3 | GFlasso optimization | 130 | 03:18:04 | 10:56:18 | 418:12:37 |
14 | GFlasso validation error stage 3 | GFlasso optimization | 1 | 00:56:32 | 00:56:32 | 00:00:00 |