Figure 2From: EggLib: processing, analysis and simulation tools for population genetics and genomicsEffect of missing data and quality threshold on the detection of polymorphic sites. Estimates of the number of polymorphic sites as a function of the proportion of missing data for different quality thresholds (red = 100%, magenta = 90%, green = 50%, blue = 10%). The simulations parameters are as follow: number of segregating sites = 30; sample size = 40; only polymorphic sites are generated and analyzed; for each value of the proportion of mission data, nucleotides are replaced by N's by random sampling without replacement. Each point represents the average over 5000 repetitions.Back to article page