Skip to main content


Springer Nature is making SARS-CoV-2 and COVID-19 research free. View research | View latest news | Sign up for updates

Figure 2 | BMC Genetics

Figure 2

From: EggLib: processing, analysis and simulation tools for population genetics and genomics

Figure 2

Effect of missing data and quality threshold on the detection of polymorphic sites. Estimates of the number of polymorphic sites as a function of the proportion of missing data for different quality thresholds (red = 100%, magenta = 90%, green = 50%, blue = 10%). The simulations parameters are as follow: number of segregating sites = 30; sample size = 40; only polymorphic sites are generated and analyzed; for each value of the proportion of mission data, nucleotides are replaced by N's by random sampling without replacement. Each point represents the average over 5000 repetitions.

Back to article page