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Table 6 Power, RMSE of the QTL location and proportion of estimated QTL locations at marker locations according to the true QTL location under H1

From: Statistical properties of interval mapping methods on quantitative trait loci location: impact on QTL/eQTL analyses

  

QTL location (M)

 

α 1

0

0.05

0.1

0.15

0.2

Power2 (%)

0.05

96.1

92.3

87.2

82.0

81.2

 

0.01

87.4

80.1

69.7

61.9

60.2

RMSE3 (cM)

-

7.5

7.6

9.5

10.7

11.2

 

0.05

7.2

7.2

9.0

10.1

10.7

 

0.01

7.0

7.0

8.6

9.7

10.3

Proportion4 (%)

-

51.5

38.6

26.6

19.0

16.2

 

0.05

51.3

37.8

24.8

15.8

13.6

 

0.01

50.9

37.2

24.3

13.8

11.2

  1. 1Significance level for the LRT.
  2. 2Power of the QTL detection for significance level α.
  3. 3RMSE of the estimated QTL location in a population of 300 progeny with a true QTL located at 0.1 M on a 0.4 M linkage group.
  4. 4Proportion of QTL located at a marker location (2 markers located at 0 M and 0.4 M).
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BMC Genomic Data

ISSN: 2730-6844

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