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Figure 1 | BMC Genetics

Figure 1

From: Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data

Figure 1

G1000 SNPs and novel SNPs are qualitatively similar. (A) SNP quality scores and (B) genotype quality scores of the G1000 SNPs and novel SNPs are shown for each of the indicated cell lines as standard box-plots. G1000 SNPs are those identified de novo from ChIP-seq data but overlap with the 1000 Genomes Project Pilot 2 SNP calls. (C) Individual distribution of SNPs. G1000 SNPs and novel SNPs discovered in GM12878 and GM19240 CTCF samples were categorized according to their individual distribution. For example, ‘1’ represents SNPs found in only one of the six individuals, ‘2’ represents SNPs found in two individuals, etc.

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