Figure 5
From: Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data
Bias analysis with discovery SNPs. Each plot is a scatter plot of percent reference allele (reads with reference allele/total reads) at shared heterozygous SNPs between two individuals as indicated on the top and right. SNPs that were significantly biased in at least one of the two individuals with an FDR corrected P-value less than 0.05 are included. The inset tables show the Spearman correlation of the bias between two individuals (top) and the Spearman P-values (bottom).