From: Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data
Cell line | factor | aligned reads | Ht5 regions | total SNPs | novel SNPs | Ti/Tv |
---|---|---|---|---|---|---|
GM12878 | CTCF | 30,400,254 | 0.40% | 112,999 | 2989(2.6%) | 2.04 |
GM12891 | CTCF | 28,282,066 | 0.45% | 137,056 | 3443(2.5%) | 2.18 |
GM12892 | CTCF | 41,857,998 | 0.75% | 206,349 | 5439(2.6%) | 2.13 |
GM19238 | CTCF | 31,125,372 | 0.53% | 154,211 | 7474(4.8%) | 2.11 |
GM19239 | CTCF | 24,857,361 | 0.41% | 153,092 | 7034(4.6%) | 2.13 |
GM19240 | CTCF | 32,009,059 | 0.45% | 144,088 | 7832(5.4%) | 2.11 |
GM12878 | RNAPII | 85,763,827 | 0.55% | 152,071 | 5720(3.8%) | 2.03 |
GM12878 | H3K4me3 | 74,464,458 | 1.95% | 200,675 | 8231(4.1%) | 1.99 |
FB8470 | CTCF | 39,394,358 | 0.47% | 173,336 | 4344(2.5%) | 2.11 |
H1 ESC | CTCF | 14,462,504 | 0.28% | 94,398 | 2308(2.4%) | 2.18 |
Progeria | CTCF | 46,925,953 | 0.47% | 220,871 | 5328(2.4%) | 2.06 |
HUVEC | CTCF | 21,734,605 | 0.32% | 55,492 | 1117(2.0%) | 2.08 |