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Table 2 Association analysis based on MLM

From: Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean

Trait

Marker

LG

Environment

R2

p value

Putative function

DF

BM143a

2

drought

0.4643

0.0315

*

-

DF

BM143a

2

irrigation

0.4747

0.0302

*

-

DF

BSn109_SNP4

8

drought

0.2035

0.0023

**

-

DF

BSn109_SNP4

8

irrigation

0.2016

0.0024

**

-

DF

BSn244_2a

3

drought

0.1383

0.0015

**

acyl acp-thioesterase

DF

BSn244_2a

3

irrigation

0.1457

0.0011

**

acyl acp-thioesterase

DM

BSn66_SNP2

2

drought

0.1883

0.0039

**

auxin response factor 2

DM

BSn66_SNP2

2

irrigation

0.2420

0.0010

***

auxin response factor 2

DM

BSn85_SNP2

8

drought

0.1017

0.0239

*

transcription factor bhlh96-like

DM

BSn85_SNP2

8

irrigation

0.1073

0.0218

*

transcription factor bhlh96-like

EP

BSNPK18

8

drought

0.1204

0.0337

*

oxygen-evolving enhancer protein chloroplastic-like

EP

BSNPK18

8

irrigation

0.1235

0.0323

*

oxygen-evolving enhancer protein chloroplastic-like

PLA

BSn244_2

3

drought

0.0527

0.0461

*

acyl acp-thioesterase

PLA

BSn244_2

3

irrigation

0.0694

0.0235

*

acyl acp-thioesterase

PP

BSn14_SNP3

9

drought

0.0918

0.0310

*

-

PP

BSn14_SNP3

9

irrigation

0.0839

0.0484

*

-

PP

BSn66_SNP2

2

drought

0.1552

0.0094

**

auxin response factor 2

PP

BSn66_SNP2

2

irrigation

0.1524

0.0133

*

auxin response factor 2

SP

BSNPK18

8

drought

0.1385

0.0206

*

oxygen-evolving enhancer protein chloroplastic-like

SP

BSNPK18

8

irrigation

0.1114

0.0460

*

oxygen-evolving enhancer protein chloroplastic-like

SPL

BSn244_2

3

drought

0.0568

0.0390

*

acyl acp-thioesterase

SPL

BSn244_2

3

irrigation

0.0667

0.0283

*

acyl acp-thioesterase

SPL

BSn66_SNP2

2

drought

0.1359

0.0192

*

auxin response factor 2

SPL

BSn66_SNP2

2

irrigation

0.1173

0.0391

*

auxin response factor 2

Yield

BSn66_SNP2

2

drought

0.1205

0.0352

*

auxin response factor 2

Yield

BSn66_SNP2

2

irrigation

0.1157

0.0406

*

auxin response factor 2

Yield

BSn85_SNP2

8

drought

0.1050

0.0235

*

transcription factor bhlh96-like

Yield

BSn85_SNP2

8

irrigation

0.0879

0.0421

*

transcription factor bhlh96-like

  1. Trait abbreviations: Days to flowering (DF), days to maturity (DM), pods per plant (PP), seed per pod (SP), seed per plant (SPL), empty pod% (EP), pod length average (PLA)
  2. a Significant association with Bonferroni correction based on GLM.