Table 3 scIvana_1 -based fragments with homology to nucleotide sequences deposited in GenBank (e-value < e -5 )
From: A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers
Marker code | Size (bp) | GenBank accession no. | Homology | E-valuea |
|---|---|---|---|---|
DIsIvSI | 138 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-27 |
DIsIvSI | 160 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 8e-27 |
DIsIvSI | 208 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 5e-29 |
DIsIvSI | 310 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-28 |
DIsIvSI | 337 | EU969904.1 | Zea mays clone 337091 mRNA sequence | 6e-28 |
DIsIvSI | 390 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial | 5e-178 |
sequence | ||||
AC216031.1 | Oryza minuta clone OM__Ba0016E09, complete sequence | 1e-70 | ||
DIsIvSI | 412 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-147 |
AC216031.1 | Oryza minuta clone OM__Ba0016E09, complete sequence | 4e-60 | ||
SIsIvSI | 158 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-28 |
SIsIvSI | 180 | AC169373.2 | Sorghum bicolor clone SB_BBc0188M08, complete sequence | 3e-36 |
FN431662.1 | Sorghum bicolor BAC contig 24P17c, cultivar Btx623 | 1e-34 | ||
SIsIvSI | 245 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-28 |
SIsIvSI | 330 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-28 |
RIsIvSI | 195 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 5e-29 |
DIsIvLI | 228 | AE009947.2 | Saccharum ‘SP-80-3280’ chloroplast, complete genome | 3e-90 |
DIsIvLI | 272 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 9e-106 |
DIsIvLI | 415 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-93 |
DIsIvLI | 605 | DQ115032.1 | Saccharum ‘SP80-3280’ clone SCCCCL6002A07 Tnt1-like, partial sequence | 2e-102 |