Nucleotide variability and linkage disequilibrium patterns in the porcine MUC4 gene

BMC Genomic Data

Table 1 Genetic variability around the MUC4 gene in Chinese and Western breeds

Breed	Ecotype	N	S	π_N	D_T	D_FL
Chinese local breeds		161	47	0.27	2.69*	2.81**
BamaXiang	South China	16	40	0.25	1.22	1.77*
Erhualian	Lower Yangtse River Basin	32	43	0.19	0.34	1.49
Hang	Central China	10	18	0.16	2.67**	2.19**
Jiangquhai	Lower Yangtse River Basin	12	39	0.26	1.30	1.74*
Jinhua	Central China	11	22	0.13	0.44	-0.82
Laiwu	North China	13	34	0.26	2.10*	2.02**
Rongchang	Southwest China	13	30	0.22	1.75	2.02**
Shaziling	Central China	8	27	0.20	1.17	1.71*
Tongcheng	Central China	10	41	0.29	1.40	1.88**
Yushanhei	Central China	24	27	0.20	2.54*	2.44**
Zangzhu	Plateau	12	29	0.21	1.73	1.99**
Western commercial Breeds		146	37	0.23	2.99**	3.05**
Duroc		32	30	0.22	2.65*	2.36**
White Duroc		16	29	0.23	2.46*	2.33**
Landrace		32	33	0.16	0.79	-0.24
Large White		66	37	0.22	2.17*	2.55**
Wild boars		5	42	0.28	-0.06	0.19
Wild Boars-CN		4	22	0.19	0.87	1.03
ALL		312	53	0.38	4.49***	3.95**

* P < 0.05, ** P < 0.01, N, number of animals; S, number of segregating sites; π_N, mean number of pairwise differences across SNPs; D_T, Tajima’s D; D_FL, Fu and Li’s D index. Wild Boars-CN, Chinese wild boars.

ISSN: 2730-6844