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Table 1 Genetic diversity values for SNPs across the 401 accessions of the common bean wild (104 accessions) and cultivated (297 accessions) collections

From: Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

Gene Set of sequences SNP Position consensus SNP type Majority allele Minority allele Majority allele frequency Minority allele frequency PIC*
Asr1 Cultivated 1 621 [T/C] T C 0.56 0.44 0.49
Wild intron 1 57 [A/C] A C 0.91 0.09 0.17
2 68 [T/C] T C 0.88 0.12 0.21
Wild exon 1 20 [T/C] C T 0.97 0.03 0.05
2 161 [T/C] T C 0.81 0.19 0.31
3 233 [T/C] C T 0.84 0.16 0.27
Asr2 Total** 1 24 [A/T] T A 0.86 0.14 0.25
2 29 [T/G] G T 0.86 0.14 0.25
3 127 [C/G] C G 0.98 0.02 0.03
Cultivated 1 6 [A/T] A T 0.93 0.07 0.12
2 26 [A/T] T A 0.93 0.07 0.12
3 31 [T/G] G T 0.93 0.07 0.12
Wild 1 247 [C/G] G C 0.93 0.07 0.13
2 345 [A/C] C A 0.62 0.38 0.47
3 350 [A/T] A T 0.62 0.38 0.47
  1. * PIC values higher than 0.2 indicated in bold text, PIC values between 0.1 and 0.19 indicated in italics.**Polymorphic sites only observed in heterozygotes are not depicted.